Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G003731`

染色体: Chr01 坐标: 55603656-55606464 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G003731`
名称	SmilChr01G003731
描述	inactive glucose-1-phosphate adenylyltransferase small subunit 2, chloroplastic
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	55603656 - 55606464 / `-`

ID 对照

NCBI Gene ID	`LOC130995583`
GeneID	`130995583`
locus_tag	`-`
NCBI Name	`LOC130995583`
原始查询	`LOC130995583`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	inactive glucose-1-phosphate adenylyltransferase small subunit 2, chloroplastic
产物	inactive glucose-1-phosphate adenylyltransferase small subunit 2%2C chloroplastic
Arabidopsis	`AT1G05610` (APS2) ADP-glucose pyrophosphorylase small subunit 2 [Source:NCBI gene (formerly Entrezgene);Acc:837066] identity=60.6; qcov=0.956; evalue=0; confidence=high
Rice	`Os08g0345800` (OsAGPS2a) glucose-1-phosphate adenylyltransferase small subunit 2, chloroplastic/amyloplastic/cytosolic-like [Source:NCBI gene (formerly Entrezgene);Acc:4345339] identity=48.8; qcov=1; evalue=3.24e-155; confidence=high
GO	GO:0005978 (glycogen biosynthetic process); GO:0008878 (glucose-1-phosphate adenylyltransferase activity)
KEGG	smil00500 (Starch and sucrose metabolism - Salvia miltiorrhiza (redroot sage)); smil00520 (Amino sugar and nucleotide sugar metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01250 (Biosynthesis of nucleotide sugars - Salvia miltiorrhiza (redroot sage))
Pfam	PF00483 (NTP_transferase); PF24894 (Hexapep_GlmU); PF25247 (LbH_GLGC)
InterPro	-
eggNOG	-
NR	GeneID:130995583

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057776917.1`
2	Chloroplast stroma	叶绿体基质	0.60000	`XP_057776917.1`
3	Nucleus	细胞核	0.00000	`XP_057776917.1`
4	Chromosome	染色体	0.00000	`XP_057776917.1`
5	Centromere	着丝粒	0.00000	`XP_057776917.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:55604564`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr1:55604904`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B28,B65,B90,B92
`Chr1:55604988`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr1:55605141`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B68,D4
`Chr1:55605159`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B109,B46,B68,D4
`Chr1:55605493`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B140
`Chr1:55605598`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B3
`Chr1:55605629`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B68,D4

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057776917.1

458 aa

229

458

NTP_transferase

LbH_GLGC

Hexapep_GlmU

PF00483 NTP_transferase 56-302 aa PF25247 LbH_GLGC 325-457 aa PF24894 Hexapep_GlmU 335-377 aa

XP_057776927.1

457 aa

228

457

NTP_transferase

LbH_GLGC

Hexapep_GlmU

PF00483 NTP_transferase 56-302 aa PF25247 LbH_GLGC 324-456 aa PF24894 Hexapep_GlmU 334-376 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057776917.1`	Pfam	`PF00483`	NTP_transferase	Family	56	302	5.1e-42	144.8	Nucleotidyl transferase
`XP_057776917.1`	Pfam	`PF25247`	LbH_GLGC	Repeat	325	457	3.1e-42	144.4	GLGC left-handed parallel beta-helix domain
`XP_057776917.1`	Pfam	`PF24894`	Hexapep_GlmU	Repeat	335	377	1.3e-08	35.6	GlmU-like, C-terminal hexapeptide
`XP_057776927.1`	Pfam	`PF00483`	NTP_transferase	Family	56	302	5.1e-42	144.9	Nucleotidyl transferase
`XP_057776927.1`	Pfam	`PF25247`	LbH_GLGC	Repeat	324	456	3.1e-42	144.4	GLGC left-handed parallel beta-helix domain
`XP_057776927.1`	Pfam	`PF24894`	Hexapep_GlmU	Repeat	334	376	1.3e-08	35.6	GlmU-like, C-terminal hexapeptide

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057920934.1
TCTTTCTTGATAAAAAACACATTTAAAATTCGAGATTACGTATAAATGATTAATGACTGATAAAGCTTAATAAGGGCAAAAATTAGAGGCTAAGACAGTCTTTTGAGAGGGGATCGCATGGAGCAGCAAGCATCTCACATGGTGGAATAAAGACACAAAAAAGTGAAGAGAAGAAGAAGCTTAGAGCAAAAGTATCAGAAATCATAGTAATATGGTAAGAGACAAAAAAAAACAAAAGAAAAAAAGAAGCAGAAGAAGAA...

XM_057920944.1
TCTTGATAAAAAACACATTTAAAATTCGAGATTACGTATAAATGATTAATGACTGATAAAGCTTAATAAGGGCAAAAATTAGAGGCTAAGACAGTCTTTTGAGAGGGGATCGCATGGAGCAGCAAGCATCTCACATGGTGGAATAAAGACACAAAAAAGTGAAGAGAAGAAGAAGCTTAGAGCAAAAGTATCAGAAATCATAGTAATATGGTAAGAGACAAAAAAAAACAAAAGAAAAAAAGAAGCAGAAGAAGAAGAAG...

CDS

2 records

下载 CDS FASTA

LOC130995583
ATGCCTATGCTCTCTTCACTGTGTAGCCTTCCCTACACTTGCTACAAGCTCACGTCTCCTTCTTCTTTCGTGAAGAGCTCGCAGAATCCAGACTGCTTGAACTCTCTGTTCCCACCAGCAAGCCAGAGTGTTGCAGCAATTGTGTTTGGAGATCAGTCCTCGCAGTCGAGGCTGTACCCGCTGACAAAGAGGAGATCAGAGGCTGCCATTCCCATAGCTGGGAGCTACAGGCTGGTTGATGCTGTTCTGAGCAACTGCAT...

Protein

2 records

下载 Protein FASTA

XP_057776917.1
MPMLSSLCSLPYTCYKLTSPSSFVKSSQNPDCLNSLFPPASQSVAAIVFGDQSSQSRLYPLTKRRSEAAIPIAGSYRLVDAVLSNCINSNITKIYALTQFNSTSLNSHIARAYSGARLSKDGFVEVIAAYQSPDDNGWFQGTADAIRRCLWVLEEYPVNEFLILPGHHLYRMDYQKLIDAHRRSKAHITVSLFSKAENKDHGFGIFKLNAQNQVLEFRENPNHHFRVNERDDDVFSSMGIYVINRDVMRMLLTEAFPNVN...

XP_057776927.1
MPMLSSLCSLPYTCYKLTSPSSFVKSSQNPDCLNSLFPPASQSVAAIVFGDQSSQSRLYPLTKRRSEAAIPIAGSYRLVDAVLSNCINSNITKIYALTQFNSTSLNSHIARAYSGARLSKDGFVEVIAAYQSPDDNGWFQGTADAIRRCLWVLEEYPVNEFLILPGHHLYRMDYQKLIDAHRRSKAHITVSLFSKAENKDHGFGIFKLNAQNQVLEFRENPNHHFRVNERDDDVFSSMGIYVINRDVMRMLLTEAFPNVN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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