Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G001904`

染色体: Chr07 坐标: 16441055-16444569 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G001904`
名称	SmilChr07G001904
描述	lipoxygenase 6, chloroplastic
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	16441055 - 16444569 / `-`

ID 对照

NCBI Gene ID	`LOC130995589`
GeneID	`130995589`
locus_tag	`-`
NCBI Name	`LOC130995589`
原始查询	`LOC130995589`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	lipoxygenase 6, chloroplastic
产物	lipoxygenase 6%2C chloroplastic
Arabidopsis	`AT1G67560` (LOX6) PLAT/LH2 domain-containing lipoxygenase family protein [Source:NCBI gene (formerly Entrezgene);Acc:843077] identity=61.4; qcov=1.01; evalue=0; confidence=high
Rice	`Os03g0179900` (OsLOX2) - identity=51.7; qcov=0.993; evalue=0; confidence=high
GO	GO:0005515 (protein binding); GO:0016702 (oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen); GO:0034440 (lipid oxidation); GO:0046872 (metal ion binding)
KEGG	smil00591 (Linoleic acid metabolism - Salvia miltiorrhiza (redroot sage)); smil00592 (alpha-Linolenic acid metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF00305 (Lipoxygenase)
InterPro	-
eggNOG	-
NR	GeneID:130995589

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057776930.1`
2	Chloroplast stroma	叶绿体基质	0.80000	`XP_057776930.1`
3	Nucleus	细胞核	0.00000	`XP_057776930.1`
4	Chromosome	染色体	0.00000	`XP_057776930.1`
5	Centromere	着丝粒	0.00000	`XP_057776930.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:16441632`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C23,D6
`Chr7:16442523`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B113,B97
`Chr7:16442848`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A9,B53
`Chr7:16442882`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A6,B14,B26,B64,C77
`Chr7:16442987`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B2
`Chr7:16443146`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B14,C77
`Chr7:16443443`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B34,B69,B95,C41,C74
`Chr7:16443565`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A10,B126,B46,B68,B71
`Chr7:16443729`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr7:16444007`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A19,B109,B22,C23,C83
`Chr7:16444038`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr7:16444244`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057776930.1

905 aa

452

905

Lipoxygenase

PF00305 Lipoxygenase 222-888 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057776930.1`	Pfam	`PF00305`	Lipoxygenase	Domain	222	888	0	1012.4	Lipoxygenase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057920947.1
ATGCTTAGAGCTCAGGCCAGCCCCACCACTCTCCGGCGGCCGGAGGCCTTCCCCGCCGCCGTGAAACAGCACAGGGCCTCCAGCCTGCCCGGGCTCCGGCCCGGGAGGCGGGCGGCAATAAGGGCTGTGATCAGCAGTGGAGATAGCAAAGCAGGAGTGGAAACAGCAGAGAAGGCTGTGGAGAGTAGTAGTGGAGCTTTGGAGACTTTTTCAACAAGTGGAGGTGTGAGTGTGAGAGCAGTGATCAGAATAAGGAAGAA...

CDS

1 records

下载 CDS FASTA

LOC130995589
ATGCTTAGAGCTCAGGCCAGCCCCACCACTCTCCGGCGGCCGGAGGCCTTCCCCGCCGCCGTGAAACAGCACAGGGCCTCCAGCCTGCCCGGGCTCCGGCCCGGGAGGCGGGCGGCAATAAGGGCTGTGATCAGCAGTGGAGATAGCAAAGCAGGAGTGGAAACAGCAGAGAAGGCTGTGGAGAGTAGTAGTGGAGCTTTGGAGACTTTTTCAACAAGTGGAGGTGTGAGTGTGAGAGCAGTGATCAGAATAAGGAAGAA...

Protein

1 records

下载 Protein FASTA

XP_057776930.1
MLRAQASPTTLRRPEAFPAAVKQHRASSLPGLRPGRRAAIRAVISSGDSKAGVETAEKAVESSSGALETFSTSGGVSVRAVIRIRKKMKEKLLDKIEDQWDSFLNGIGRGISLQLISQEPHLGKSGETFVRGWLPRLSDNPYVVEYGADMVVSKDFGQPGAVVVTNFHEKEVFLMEIVVHGFKEGPLFFTADTWIHSRKDNPESRIIFKNQAYLPSETPAGIKSLRQQDLLSVRGDGKGERKLHERIYDYDVYNDLGNPD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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