当前解析结果
SmilChr07G001913| 统一新 Gene ID | SmilChr07G001913 |
|---|---|
| 名称 | SmilChr07G001913 |
| 描述 | U-box domain-containing protein 45-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 16530812 - 16535859 / - |
| NCBI Gene ID | LOC130995599 |
|---|---|
| GeneID | 130995599 |
| locus_tag | - |
| NCBI Name | LOC130995599 |
| 原始查询 | LOC130995599 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | U-box domain-containing protein 45-like |
| 产物 | U-box domain-containing protein 45-like |
| Arabidopsis | AT1G24330 (AT1G24330)ARM repeat superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:839049] identity=64.2; qcov=1.01; evalue=0; confidence=high |
| Rice | Os01g0901000 (OsPUB28)- identity=54.9; qcov=1.05; evalue=0; confidence=high |
| GO | GO:0004842 (ubiquitin-protein transferase activity); GO:0005515 (protein binding); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0016567 (protein ubiquitination) |
| KEGG | - |
| Pfam | PF04564 (U-box); PF25598 (ARM_PUB) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130995599 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057776936.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057776936.1 |
| 3 | Cell membrane | 细胞膜 | 0.20000 | XP_057776936.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057776936.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057776936.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:16531331 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A23,B86,C76 |
Chr7:16531383 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B108 |
Chr7:16531709 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B140,C2 |
Chr7:16531720 |
G |
A |
EMS_canonical_SNV | stop_gained | 2 | B119,B70 |
Chr7:16531720 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B119,B70 |
Chr7:16531722 |
TC |
T |
1bp_deletion | frameshift_variant | 102 | A1,A10,A13,A16,A19,A4,A5,A8,B106,B108,B110,B114,B119,B125,B127,B130,B132,B135,B136,B140,B16,B17,B18,B19,B2,B22,B24,B25,B28,B30,B31,B36,B38,B39,B41,B42,B43,B48,B5,B50,B52,B56,B58,B6,B62,B64,B66,B68,B7,B70,B71,B76,B77,B8,B80,B81,B82,B85,B88,B9,B90,B92,B93,B94,B96,B98,B99,C1,C10,C12,C15,C17,C18,C19,C20,C24,C3,C31,C35,C37,C38,C4,C41,C44,C47,C51,C52,C54,C55,C57,C6,C62,C64,C66,C73,C74,C79,C8,C82,C83,D6,D9 |
Chr7:16531753 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B26,C2 |
Chr7:16531766 |
AG |
A |
1bp_deletion | frameshift_variant | 9 | A20,B115,B119,B122,B134,B33,B35,B78,C78 |
Chr7:16531819 |
T |
TAA |
2bp_insertion | frameshift_variant | 4 | A20,B119,B26,C2 |
Chr7:16531819 |
T |
TAA |
2bp_insertion | CDS_variant | 4 | A20,B119,B26,C2 |
Chr7:16531849 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D6 |
Chr7:16531859 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A20,B119,B26,C2 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057776936.1PF04564
U-box 282-351 aa
PF25598
ARM_PUB 558-714 aa
XP_057776937.1PF04564
U-box 282-351 aa
PF25598
ARM_PUB 558-714 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057776936.1 |
Pfam | PF04564 |
U-box | Domain | 282 | 351 | 5.2e-19 | 68.9 | U-box domain |
XP_057776936.1 |
Pfam | PF25598 |
ARM_PUB | Repeat | 558 | 714 | 1.2e-17 | 65.0 | Plant U-box protein ARM repeat region |
XP_057776937.1 |
Pfam | PF04564 |
U-box | Domain | 282 | 351 | 5.2e-19 | 68.9 | U-box domain |
XP_057776937.1 |
Pfam | PF25598 |
ARM_PUB | Repeat | 558 | 714 | 1.2e-17 | 65.0 | Plant U-box protein ARM repeat region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。