当前解析结果
SmilChr01G003733| 统一新 Gene ID | SmilChr01G003733 |
|---|---|
| 名称 | SmilChr01G003733 |
| 描述 | pentatricopeptide repeat-containing protein At1g76280 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 55618087 - 55625874 / - |
| NCBI Gene ID | LOC130995623 |
|---|---|
| GeneID | 130995623 |
| locus_tag | - |
| NCBI Name | LOC130995623 |
| 原始查询 | LOC130995623 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | pentatricopeptide repeat-containing protein At1g76280 |
| 产物 | pentatricopeptide repeat-containing protein At1g76280 |
| Arabidopsis | AT1G76280 (AT1G76280)Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:843961] identity=45.7; qcov=0.994; evalue=0; confidence=high |
| Rice | Os03g0597200 (YSA)- identity=23; qcov=0.477; evalue=7.81e-19; confidence=weak |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF01535 (PPR); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130995623 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057776966.1 |
| 2 | Chloroplast | 叶绿体 | 0.20000 | XP_057776974.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057776966.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057776966.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057776966.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:55618765 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B129,C8 |
Chr1:55618826 |
TTC |
T |
2bp_deletion | frameshift_variant | 1 | B31 |
Chr1:55618826 |
TTC |
T |
2bp_deletion | CDS_variant | 1 | B31 |
Chr1:55620211 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B24,B56,B96 |
Chr1:55621311 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B62 |
Chr1:55621873 |
TA |
T |
1bp_deletion | frameshift_variant | 1 | B107 |
Chr1:55621873 |
TA |
T |
1bp_deletion | CDS_variant | 1 | B107 |
Chr1:55623039 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A10 |
Chr1:55623098 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
Chr1:55623320 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B123 |
Chr1:55624133 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B84 |
Chr1:55625218 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057776966.1PF23276
TPR_24 94-219 aa
PF13812
PPR_3 155-204 aa
PF13812
PPR_3 371-416 aa
PF13812
PPR_3 449-496 aa
PF13812
PPR_3 567-616 aa
PF01535
PPR 573-602 aa
PF13041
PPR_2 573-616 aa
PF01535
PPR 607-637 aa
PF17177
PPR_long 611-739 aa
PF13812
PPR_3 630-685 aa
XP_057776974.1PF23276
TPR_24 57-182 aa
PF13812
PPR_3 118-167 aa
PF13812
PPR_3 334-379 aa
PF13812
PPR_3 412-459 aa
PF13812
PPR_3 530-579 aa
PF01535
PPR 536-565 aa
PF13041
PPR_2 536-579 aa
PF01535
PPR 570-600 aa
PF17177
PPR_long 574-702 aa
PF13812
PPR_3 593-648 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057776966.1 |
Pfam | PF23276 |
TPR_24 | Repeat | 94 | 219 | 9.6e-17 | 61.8 | Pentatricopeptide repeat-containing protein |
XP_057776966.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 155 | 204 | 2.3e-38 | 130.8 | Pentatricopeptide repeat domain |
XP_057776966.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 371 | 416 | 2.3e-38 | 130.8 | Pentatricopeptide repeat domain |
XP_057776966.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 449 | 496 | 2.3e-38 | 130.8 | Pentatricopeptide repeat domain |
XP_057776966.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 567 | 616 | 2.3e-38 | 130.8 | Pentatricopeptide repeat domain |
XP_057776966.1 |
Pfam | PF01535 |
PPR | Repeat | 573 | 602 | 1.1e-17 | 63.6 | PPR repeat |
XP_057776966.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 573 | 616 | 9e-43 | 144.9 | PPR repeat family |
XP_057776966.1 |
Pfam | PF01535 |
PPR | Repeat | 607 | 637 | 1.1e-17 | 63.6 | PPR repeat |
XP_057776966.1 |
Pfam | PF17177 |
PPR_long | Repeat | 611 | 739 | 1.2e-21 | 77.8 | Pentacotripeptide-repeat region of PRORP |
XP_057776966.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 630 | 685 | 2.3e-38 | 130.8 | Pentatricopeptide repeat domain |
XP_057776974.1 |
Pfam | PF23276 |
TPR_24 | Repeat | 57 | 182 | 8.9e-17 | 62.0 | Pentatricopeptide repeat-containing protein |
XP_057776974.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 118 | 167 | 1.7e-38 | 131.2 | Pentatricopeptide repeat domain |
XP_057776974.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 334 | 379 | 1.7e-38 | 131.2 | Pentatricopeptide repeat domain |
XP_057776974.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 412 | 459 | 1.7e-38 | 131.2 | Pentatricopeptide repeat domain |
XP_057776974.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 530 | 579 | 1.7e-38 | 131.2 | Pentatricopeptide repeat domain |
XP_057776974.1 |
Pfam | PF01535 |
PPR | Repeat | 536 | 565 | 2e-17 | 62.8 | PPR repeat |
XP_057776974.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 536 | 579 | 5.6e-43 | 145.5 | PPR repeat family |
XP_057776974.1 |
Pfam | PF01535 |
PPR | Repeat | 570 | 600 | 2e-17 | 62.8 | PPR repeat |
XP_057776974.1 |
Pfam | PF17177 |
PPR_long | Repeat | 574 | 702 | 7.4e-22 | 78.5 | Pentacotripeptide-repeat region of PRORP |
XP_057776974.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 593 | 648 | 1.7e-38 | 131.2 | Pentatricopeptide repeat domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。