当前解析结果
SmilChr07G001993| 统一新 Gene ID | SmilChr07G001993 |
|---|---|
| 名称 | SmilChr07G001993 |
| 描述 | uncharacterized SmilChr07G001993 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 17567130 - 17569894 / + |
| NCBI Gene ID | LOC130995658 |
|---|---|
| GeneID | 130995658 |
| locus_tag | - |
| NCBI Name | LOC130995658 |
| 原始查询 | LOC130995658 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Gap junction beta-4 protein [Source:NCBI gene (formerly Entrezgene);Acc:831149]; symbol=AT5G13100; hit=AT5G13100; species=arabidopsis; confidence=high |
| 产物 | Gap junction beta-4 protein [Source:NCBI gene (formerly Entrezgene);Acc:831149]; symbol=AT5G13100; hit=AT5G13100; species=arabidopsis; confidence=high |
| Arabidopsis | AT5G13100 (AT5G13100)Gap junction beta-4 protein [Source:NCBI gene (formerly Entrezgene);Acc:831149] identity=64.9; qcov=1.06; evalue=4.02e-155; confidence=high |
| Rice | Os01g0102500 (P0402A09.23)- identity=69.1; qcov=0.861; evalue=1.7e-142; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130995658 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057777008.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057777008.1 |
| 3 | Cytoplasm | 细胞质 | 0.80000 | XP_057777008.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057777008.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057777008.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:17567645 |
GGC |
G |
2bp_deletion | frameshift_variant | 1 | B137 |
Chr7:17567645 |
GGC |
G |
2bp_deletion | CDS_variant | 1 | B137 |
Chr7:17567718 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
Chr7:17568072 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A21 |
Chr7:17568097 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr7:17569028 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C83 |
Chr7:17569487 |
CA |
C |
1bp_deletion | frameshift_variant | 188 | A1,A10,A11,A13,A14,A15,A16,A18,A2,A23,A25,A3,A4,A5,A7,A8,A9,B10,B100,B101,B102,B103,B105,B106,B108,B109,B11,B111,B114,B117,B12,B120,B123,B124,B125,B126,B127,B128,B13,B132,B133,B134,B135,B138,B139,B14,B140,B15,B16,B17,B18,B19,B21,B23,B24,B26,B27,B28,B29,B3,B31,B32,B33,B34,B35,B36,B38,B39,B4,B40,B41,B42,B43,B44,B45,B46,B48,B49,B52,B53,B54,B56,B57,B58,B59,B6,B60,B61,B62,B64,B67,B68,B69,B7,B70,B71,B72,B73,B74,B76,B77,B78,B79,B8,B80,B81,B82,B83,B85,B86,B87,B88,B9,B90,B92,B93,B94,B95,B96,B97,B99,C1,C10,C11,C12,C14,C15,C16,C18,C19,C2,C20,C21,C22,C23,C24,C25,C26,C27,C28,C3,C30,C32,C34,C36,C39,C41,C45,C47,C48,C49,C50,C51,C52,C53,C56,C61,C62,C64,C66,C67,C68,C69,C7,C72,C74,C75,C76,C77,C78,C79,C8,C80,C81,C82,C83,C84,C85,C86,C9,D10,D11,D2,D3,D6,D7,D8,D9 |
Chr7:17569488 |
A |
AG |
1bp_insertion | frameshift_variant | 3 | B89,C58,C73 |
Chr7:17569488 |
A |
AG |
1bp_insertion | CDS_variant | 3 | B89,C58,C73 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。