当前解析结果
SmilChr07G002676| 统一新 Gene ID | SmilChr07G002676 |
|---|---|
| 名称 | SmilChr07G002676 |
| 描述 | glycerol-3-phosphate acyltransferase RAM2-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 26167380 - 26169287 / - |
| NCBI Gene ID | LOC130995685 |
|---|---|
| GeneID | 130995685 |
| locus_tag | - |
| NCBI Name | LOC130995685 |
| 原始查询 | LOC130995685 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | glycerol-3-phosphate acyltransferase RAM2-like |
| 产物 | glycerol-3-phosphate acyltransferase RAM2-like |
| Arabidopsis | AT2G38110 (GPAT6)glycerol-3-phosphate acyltransferase 6 [Source:NCBI gene (formerly Entrezgene);Acc:818389] identity=53.4; qcov=0.934; evalue=0; confidence=high |
| Rice | Os03g0735900 (GPAT)- identity=75; qcov=0.883; evalue=0; confidence=high |
| GO | GO:0010143 (cutin biosynthetic process); GO:0016020 (membrane); GO:0016791 (phosphatase activity); GO:0090447 (glycerol-3-phosphate 2-O-acyltransferase activity) |
| KEGG | - |
| Pfam | PF01553 (Acyltransferase); PF12710 (HAD); PF23270 (HAD_RAM2_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130995685 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057777056.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 0.80000 | XP_057777056.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057777056.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057777056.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057777056.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:26167540 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B37,C8 |
Chr7:26167750 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B129 |
Chr7:26167933 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B59 |
Chr7:26168465 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A2,C18 |
Chr7:26168475 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B82,B85,B95,C46 |
Chr7:26168481 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A2,C18 |
Chr7:26168496 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C17,C84 |
Chr7:26168515 |
GC |
G |
1bp_deletion | frameshift_variant | 63 | A10,A2,A25,A6,B101,B103,B104,B105,B11,B110,B115,B119,B12,B124,B127,B129,B131,B136,B139,B18,B29,B35,B36,B50,B57,B63,B68,B70,B78,B79,B82,B85,B87,B9,B92,B95,B99,C17,C18,C25,C27,C31,C44,C46,C51,C55,C59,C6,C61,C63,C69,C7,C72,C75,C76,C82,C84,C86,C9,D1,D10,D3,D4 |
Chr7:26168523 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B85,C71,C75 |
Chr7:26168526 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C6 |
Chr7:26168544 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A2,C18 |
Chr7:26168556 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A10 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057777056.1PF23270
HAD_RAM2_N 50-238 aa
PF12710
HAD 51-229 aa
PF01553
Acyltransferase 328-428 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057777056.1 |
Pfam | PF23270 |
HAD_RAM2_N | Domain | 50 | 238 | 1.5e-64 | 217.9 | Glycerol-3-phosphate acyltransferase RAM2-like, HAD-like domain |
XP_057777056.1 |
Pfam | PF12710 |
HAD | Family | 51 | 229 | 5e-26 | 93.0 | haloacid dehalogenase-like hydrolase |
XP_057777056.1 |
Pfam | PF01553 |
Acyltransferase | Family | 328 | 428 | 9.2e-07 | 29.5 | Acyltransferase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。