当前解析结果
SmilChr07G002681| 统一新 Gene ID | SmilChr07G002681 |
|---|---|
| 名称 | SmilChr07G002681 |
| 描述 | rust resistance kinase Lr10-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 26223008 - 26226450 / + |
| NCBI Gene ID | LOC130995692 |
|---|---|
| GeneID | 130995692 |
| locus_tag | - |
| NCBI Name | LOC130995692 |
| 原始查询 | LOC130995692 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | rust resistance kinase Lr10-like |
| 产物 | rust resistance kinase Lr10-like |
| Arabidopsis | AT5G38280 (PR5K)PR5-like receptor kinase [Source:NCBI gene (formerly Entrezgene);Acc:833810] identity=48.4; qcov=0.456; evalue=8.75e-99; confidence=medium |
| Rice | Os01g0115700- identity=39.7; qcov=0.995; evalue=3.41e-137; confidence=medium |
| GO | GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0030247 (polysaccharide binding) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr); PF13947 (GUB_WAK_bind) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130995692 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057777061.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057777061.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057777061.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057777061.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057777061.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:26223358 |
AT |
A |
1bp_deletion | frameshift_variant | 5 | B106,B120,B48,C24,C46 |
Chr7:26223358 |
AT |
A |
1bp_deletion | CDS_variant | 5 | B106,B120,B48,C24,C46 |
Chr7:26223383 |
A |
ATT |
2bp_insertion | frameshift_variant | 25 | A20,A6,B1,B104,B108,B119,B12,B122,B125,B137,B139,B14,B20,B61,B76,B81,B87,B90,B92,C21,C31,C4,C60,C83,D5 |
Chr7:26223408 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B6,D10 |
Chr7:26223472 |
G |
GA |
1bp_insertion | frameshift_variant | 107 | A11,A16,A20,A5,A6,A8,A9,B10,B100,B103,B107,B109,B112,B113,B124,B126,B128,B129,B133,B134,B135,B136,B137,B138,B140,B16,B17,B2,B21,B22,B26,B27,B28,B29,B30,B37,B40,B44,B47,B49,B5,B51,B54,B55,B58,B64,B65,B66,B67,B69,B73,B75,B76,B77,B78,B80,B82,B83,B89,B9,B90,B92,B94,B97,B98,B99,C1,C11,C16,C2,C23,C25,C26,C3,C30,C33,C38,C39,C41,C42,C43,C44,C45,C46,C51,C52,C54,C57,C6,C60,C61,C62,C67,C69,C70,C71,C73,C74,C75,C76,C78,C8,C87,D1,D4,D7,D8 |
Chr7:26223496 |
C |
CAT |
2bp_insertion | frameshift_variant | 86 | A11,A16,A20,A5,A6,A8,A9,B10,B103,B107,B109,B112,B113,B124,B126,B128,B129,B134,B136,B137,B138,B140,B16,B17,B21,B29,B30,B37,B40,B47,B49,B51,B54,B55,B65,B66,B67,B69,B73,B75,B76,B77,B78,B80,B82,B83,B89,B9,B90,B92,B94,B97,B98,B99,C1,C11,C23,C25,C26,C3,C30,C33,C38,C39,C41,C43,C44,C45,C51,C54,C57,C6,C60,C61,C62,C67,C69,C70,C71,C73,C74,C75,C76,C87,D1,D10 |
Chr7:26223510 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr7:26223533 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C15 |
Chr7:26223700 |
AG |
A |
1bp_deletion | frameshift_variant | 26 | A25,A7,B102,B105,B106,B123,B131,B133,B36,B38,B39,B84,B91,C10,C14,C18,C2,C22,C45,C59,C63,C7,C72,C82,C86,D3 |
Chr7:26223713 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B24,B33,B67,C53 |
Chr7:26223731 |
AGT |
A |
2bp_deletion | frameshift_variant | 2 | C32,C68 |
Chr7:26223731 |
AGT |
A |
2bp_deletion | CDS_variant | 2 | C32,C68 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057777061.1PF13947
GUB_WAK_bind 20-79 aa
PF07714
PK_Tyr_Ser-Thr 426-697 aa
PF00069
Pkinase 427-695 aa
XP_057777062.1PF13947
GUB_WAK_bind 20-79 aa
PF07714
PK_Tyr_Ser-Thr 414-685 aa
PF00069
Pkinase 415-683 aa
XP_057777063.1PF13947
GUB_WAK_bind 20-79 aa
PF07714
PK_Tyr_Ser-Thr 413-684 aa
PF00069
Pkinase 414-682 aa
XP_057777064.1PF13947
GUB_WAK_bind 20-79 aa
PF07714
PK_Tyr_Ser-Thr 342-613 aa
PF00069
Pkinase 343-611 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057777061.1 |
Pfam | PF13947 |
GUB_WAK_bind | Domain | 20 | 79 | 4.8e-14 | 53.2 | Wall-associated receptor kinase galacturonan-binding |
XP_057777061.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 426 | 697 | 6.7e-45 | 154.1 | Protein tyrosine and serine/threonine kinase |
XP_057777061.1 |
Pfam | PF00069 |
Pkinase | Domain | 427 | 695 | 1.1e-45 | 156.8 | Protein kinase domain |
XP_057777062.1 |
Pfam | PF13947 |
GUB_WAK_bind | Domain | 20 | 79 | 4.7e-14 | 53.2 | Wall-associated receptor kinase galacturonan-binding |
XP_057777062.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 414 | 685 | 6.5e-45 | 154.2 | Protein tyrosine and serine/threonine kinase |
XP_057777062.1 |
Pfam | PF00069 |
Pkinase | Domain | 415 | 683 | 1e-45 | 156.9 | Protein kinase domain |
XP_057777063.1 |
Pfam | PF13947 |
GUB_WAK_bind | Domain | 20 | 79 | 4.6e-14 | 53.3 | Wall-associated receptor kinase galacturonan-binding |
XP_057777063.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 413 | 684 | 6.4e-45 | 154.2 | Protein tyrosine and serine/threonine kinase |
XP_057777063.1 |
Pfam | PF00069 |
Pkinase | Domain | 414 | 682 | 1e-45 | 156.9 | Protein kinase domain |
XP_057777064.1 |
Pfam | PF13947 |
GUB_WAK_bind | Domain | 20 | 79 | 3.8e-14 | 53.5 | Wall-associated receptor kinase galacturonan-binding |
XP_057777064.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 342 | 613 | 5.1e-45 | 154.5 | Protein tyrosine and serine/threonine kinase |
XP_057777064.1 |
Pfam | PF00069 |
Pkinase | Domain | 343 | 611 | 8.3e-46 | 157.2 | Protein kinase domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
4 records
下载 cDNA FASTA4 records
下载 CDS FASTA4 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。