当前解析结果
SmilChr07G002685| 统一新 Gene ID | SmilChr07G002685 |
|---|---|
| 名称 | SmilChr07G002685 |
| 描述 | glutathione S-transferase U17-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 26249528 - 26251842 / + |
| NCBI Gene ID | LOC130995704 |
|---|---|
| GeneID | 130995704 |
| locus_tag | - |
| NCBI Name | LOC130995704 |
| 原始查询 | LOC130995704 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | glutathione S-transferase U17-like |
| 产物 | glutathione S-transferase U17-like |
| Arabidopsis | AT1G10370 (ERD9)Glutathione S-transferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:837576] identity=52.07; qcov=0.96; evalue=9.44e-82; confidence=high |
| Rice | Os10g0525400 (OsGSTU15)- identity=49.31; qcov=0.938; evalue=2.27e-71; confidence=high |
| GO | GO:0004364 (glutathione transferase activity); GO:0005737 (cytoplasm); GO:0006749 (glutathione metabolic process) |
| KEGG | smil00480 (Glutathione metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00043 (GST_C); PF02798 (GST_N); PF13409 (GST_N_2); PF13417 (GST_N_3) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130995704 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:26250976 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C15,C21 |
Chr7:26250999 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B2,B75,D11 |
Chr7:26251039 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C78 |
Chr7:26251301 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C15,C21 |
Chr7:26251394 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C2 |
Chr7:26251463 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B27,B44,D7 |
Chr7:26251475 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B102,C14 |
Chr7:26251594 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C15,C21 |
Chr7:26251626 |
C |
T |
EMS_canonical_SNV | stop_gained | 10 | B108,B119,B122,B76,B81,B87,B90,B92,C21,C60 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057777079.1PF02798
GST_N 5-76 aa
PF13417
GST_N_3 8-77 aa
PF13409
GST_N_2 14-77 aa
PF00043
GST_C 99-199 aa
XP_057777080.1PF13409
GST_N_2 1-56 aa
PF13417
GST_N_3 1-56 aa
PF02798
GST_N 2-55 aa
PF00043
GST_C 78-178 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057777079.1 |
Pfam | PF02798 |
GST_N | Domain | 5 | 76 | 3.8e-18 | 66.3 | Glutathione S-transferase, N-terminal domain |
XP_057777079.1 |
Pfam | PF13417 |
GST_N_3 | Domain | 8 | 77 | 1.8e-16 | 60.9 | Glutathione S-transferase, N-terminal domain |
XP_057777079.1 |
Pfam | PF13409 |
GST_N_2 | Domain | 14 | 77 | 1e-13 | 52.4 | Glutathione S-transferase, N-terminal domain |
XP_057777079.1 |
Pfam | PF00043 |
GST_C | Domain | 99 | 199 | 2.3e-05 | 25.2 | Glutathione S-transferase, C-terminal domain |
XP_057777080.1 |
Pfam | PF13409 |
GST_N_2 | Domain | 1 | 56 | 5e-10 | 40.6 | Glutathione S-transferase, N-terminal domain |
XP_057777080.1 |
Pfam | PF13417 |
GST_N_3 | Domain | 1 | 56 | 1.1e-11 | 45.5 | Glutathione S-transferase, N-terminal domain |
XP_057777080.1 |
Pfam | PF02798 |
GST_N | Domain | 2 | 55 | 2.8e-13 | 50.7 | Glutathione S-transferase, N-terminal domain |
XP_057777080.1 |
Pfam | PF00043 |
GST_C | Domain | 78 | 178 | 1.9e-05 | 25.5 | Glutathione S-transferase, C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。