当前解析结果
SmilChr07G002694| 统一新 Gene ID | SmilChr07G002694 |
|---|---|
| 名称 | SmilChr07G002694 |
| 描述 | uncharacterized SmilChr07G002694 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 26297030 - 26299016 / + |
| NCBI Gene ID | LOC130995707 |
|---|---|
| GeneID | 130995707 |
| locus_tag | - |
| NCBI Name | LOC130995707 |
| 原始查询 | LOC130995707 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | actin cross-linking protein (DUF569) [Source:NCBI gene (formerly Entrezgene);Acc:842262]; symbol=AT1G59710; hit=AT1G59710; species=arabidopsis; confidence=high |
| 产物 | actin cross-linking protein (DUF569) [Source:NCBI gene (formerly Entrezgene);Acc:842262]; symbol=AT1G59710; hit=AT1G59710; species=arabidopsis; confidence=high |
| Arabidopsis | AT1G59710 (AT1G59710)actin cross-linking protein (DUF569) [Source:NCBI gene (formerly Entrezgene);Acc:842262] identity=59.8; qcov=1.04; evalue=1.79e-113; confidence=high |
| Rice | Os03g0801900- identity=46.5; qcov=1.2; evalue=3.23e-95; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | PF04601 (DUF569); PF22932 (Ubiq_DUF_assoc) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130995707 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.60000 | XP_057777082.1 |
| 2 | Cytosol | 细胞质基质 | 0.60000 | XP_057777082.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057777082.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057777082.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057777082.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:26297385 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B72 |
Chr7:26297391 |
C |
T |
EMS_canonical_SNV | stop_gained | 3 | B21,C26,C71 |
Chr7:26297391 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B21,C26,C71 |
Chr7:26297447 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | D10,D11 |
Chr7:26297707 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B37 |
Chr7:26297744 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B37 |
Chr7:26298270 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B104,C8 |
Chr7:26298274 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr7:26298408 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C13,C28 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057777082.1PF04601
DUF569 1-143 aa
PF22932
Ubiq_DUF_assoc 206-283 aa
XP_057777083.1PF04601
DUF569 1-143 aa
PF22932
Ubiq_DUF_assoc 206-283 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057777082.1 |
Pfam | PF04601 |
DUF569 | Domain | 1 | 143 | 3.3e-70 | 235.0 | Beta-trefoil domain of unknown function (DUF569) |
XP_057777082.1 |
Pfam | PF22932 |
Ubiq_DUF_assoc | Domain | 206 | 283 | 1.2e-08 | 35.3 | DUF569 associated ubiquitin-like domain |
XP_057777083.1 |
Pfam | PF04601 |
DUF569 | Domain | 1 | 143 | 3.3e-70 | 235.0 | Beta-trefoil domain of unknown function (DUF569) |
XP_057777083.1 |
Pfam | PF22932 |
Ubiq_DUF_assoc | Domain | 206 | 283 | 1.2e-08 | 35.3 | DUF569 associated ubiquitin-like domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。