Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G003832`

染色体: Chr01 坐标: 56641909-56652785 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G003832`
名称	SmilChr01G003832
描述	uncharacterized SmilChr01G003832
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	56641909 - 56652785 / `+`

ID 对照

NCBI Gene ID	`LOC130995710`
GeneID	`130995710`
locus_tag	`-`
NCBI Name	`LOC130995710`
原始查询	`LOC130995710`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	chromatin remodeling factor18 [Source:NCBI gene (formerly Entrezgene);Acc:841251]; symbol=CHR18; hit=AT1G48310; species=arabidopsis; confidence=high
产物	chromatin remodeling factor18 [Source:NCBI gene (formerly Entrezgene);Acc:841251]; symbol=CHR18; hit=AT1G48310; species=arabidopsis; confidence=high
Arabidopsis	`AT1G48310` (CHR18) chromatin remodeling factor18 [Source:NCBI gene (formerly Entrezgene);Acc:841251] identity=64.4; qcov=0.997; evalue=0; confidence=high
Rice	`Os07g0636200` (OJ1136_D11.106) - identity=64.3; qcov=1.01; evalue=0; confidence=high
GO	GO:0005524 (ATP binding); GO:0006281 (DNA repair); GO:0031297 (replication fork processing); GO:0043596 (nuclear replication fork); GO:0140658 (ATP-dependent chromatin remodeler activity)
KEGG	-
Pfam	PF00176 (SNF2-rel_dom); PF00271 (Helicase_C)
InterPro	-
eggNOG	-
NR	GeneID:130995710

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057777089.1`
2	Chromosome	染色体	0.00000	`XP_057777089.1`
3	Centromere	着丝粒	0.00000	`XP_057777089.1`
4	Chromatin	染色质	0.00000	`XP_057777089.1`
5	Telomere	端粒	0.00000	`XP_057777089.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:56642296`	`G`	`A`	EMS_canonical_SNV	stop_gained	73	A10,A2,A20,A24,A3,A8,B101,B103,B105,B109,B111,B114,B121,B131,B14,B15,B22,B23,B33,B36,B38,B48,B49,B5,B50,B51,B53,B55,B56,B58,B60,B61,B62,B70,B79,B86,B87,B88,B89,B91,B94,B98,C15,C17,C19,C20,C23,C24,C25,C28,C35,C37,C4,C40,C41,C43,C48,C51,C54,C56,C60,C68,C7,C73,C77,C79,C81,C87,C9,D1,D10,D4,D8
`Chr1:56642358`	`G`	`GT`	1bp_insertion	frameshift_variant	30	A2,A8,B105,B109,B114,B131,B23,B27,B36,B38,B42,B49,B51,B55,B61,B86,B87,B90,C17,C23,C24,C35,C37,C43,C7,C77,C87,C9,D10,D8
`Chr1:56642361`	`A`	`AAT`	2bp_insertion	frameshift_variant	27	A8,B105,B131,B23,B27,B36,B38,B42,B49,B51,B55,B61,B86,B87,B94,B99,C17,C23,C24,C35,C37,C43,C7,C77,C9,D10,D8
`Chr1:56642365`	`ATC`	`A`	2bp_deletion	frameshift_variant	23	A8,B105,B131,B23,B27,B36,B38,B49,B51,B55,B61,B86,B87,B90,B94,C17,C23,C24,C43,C7,C77,C9,D10
`Chr1:56642393`	`AT`	`A`	1bp_deletion	frameshift_variant	1	C47
`Chr1:56642393`	`AT`	`A`	1bp_deletion	CDS_variant	1	C47
`Chr1:56643767`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C86
`Chr1:56646406`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B61
`Chr1:56647080`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B21
`Chr1:56647177`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B114,C76
`Chr1:56648323`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B27
`Chr1:56648706`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B140,B82

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057777089.1

716 aa

358

716

SNF2-rel_dom

Helicase_C

PF00176 SNF2-rel_dom 205-477 aa PF00271 Helicase_C 506-611 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057777089.1`	Pfam	`PF00176`	SNF2-rel_dom	Domain	205	477	9.3e-34	117.5	SNF2-related domain
`XP_057777089.1`	Pfam	`PF00271`	Helicase_C	Domain	506	611	1.3e-19	71.1	Helicase conserved C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057921106.1
ATTTCACTTCCCTCATTTCCACCTCACAAACAAAAAGGAGCCAATTGGCCCAATTCCAACTTTCAAATTTTCTTGATTTCTCTTCTACTTGACACGCCGAAAACCCCAGCCCAGCTTCTCAAACCTACCATTTTCTGCCGCAATTCCAAGCAGCATACCGTATAATCATCCCTTGTTGTTCATTGATTTTGGGGCTGGGCCGCCGTGATGTTTCCGGAATTCTGACGGTGTCGGGGCGGACGGCGGTTTACAACATTGTT...

CDS

1 records

下载 CDS FASTA

LOC130995710
ATGGATGATTGGGAGTTGAGCTCGGAGGAATTGGATTCCCTAGAAAGAGACGCCTTGAAGCAATTGGCCGAGCGCAATCAATCTTGTGCTGCTGCCACAACCAGTCATATTAGTAGAAATATGGCCACTGTATCTCCTCTGCCAGCAAACGTGCCGTCTTCTCGTTCCCCAGCCAAGCCCCCCTTCCTCTCGCGTCCTCATCTCCACAATGATAAGATTAATGTCTCACAGCAAGCCAAAATGATGCCTTCACCAGTGGT...

Protein

1 records

下载 Protein FASTA

XP_057777089.1
MDDWELSSEELDSLERDALKQLAERNQSCAAATTSHISRNMATVSPLPANVPSSRSPAKPPFLSRPHLHNDKINVSQQAKMMPSPVVPKMTNNLPKPQQVKVTVKFFLHATGNIAAKFPYDKLLVGAFHNIPRASWNAKERLWMFPLSSLPTAESVLRDLPGSDVEIENLDPLVRRAIAAATAVPDLQDKYDKIPSYIESKLLSFQREGIRFILQHGARVLLADEMGLGKTLQAIAVTSCIREAWPVLIXAPSSLRLHWA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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