当前解析结果
SmilChr07G002704| 统一新 Gene ID | SmilChr07G002704 |
|---|---|
| 名称 | SmilChr07G002704 |
| 描述 | ultraviolet-B receptor UVR8 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 26413658 - 26416571 / - |
| NCBI Gene ID | LOC130995716 |
|---|---|
| GeneID | 130995716 |
| locus_tag | - |
| NCBI Name | LOC130995716 |
| 原始查询 | LOC130995716 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ultraviolet-B receptor UVR8 |
| 产物 | ultraviolet-B receptor UVR8 |
| Arabidopsis | AT1G27060 (AT1G27060)Regulator of chromosome condensation (RCC1) family protein [Source:NCBI gene (formerly Entrezgene);Acc:839595] identity=52.8; qcov=0.98; evalue=4.75e-136; confidence=high |
| Rice | Os01g0777800- identity=46.6; qcov=0.98; evalue=1.42e-106; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | PF00415 (RCC1); PF13540 (RCC1_2); PF25390 (WD40_RLD) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130995716 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057777095.1 |
| 2 | Nucleus | 细胞核 | 0.80000 | XP_057777095.1 |
| 3 | Cytosol | 细胞质基质 | 0.60000 | XP_057777095.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057777095.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057777095.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:26414276 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B26,C18 |
Chr7:26414326 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr7:26414328 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr7:26414807 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B117,B68,C48 |
Chr7:26416245 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | C8 |
Chr7:26416245 |
GC |
G |
1bp_deletion | CDS_variant | 1 | C8 |
Chr7:26416247 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C8 |
Chr7:26416287 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B100,C57,D4 |
Chr7:26416538 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B42,B43,C71 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057777095.1PF00415
RCC1 17-65 aa
PF25390
WD40_RLD 18-387 aa
PF13540
RCC1_2 52-81 aa
PF00415
RCC1 69-116 aa
PF13540
RCC1_2 104-133 aa
PF00415
RCC1 121-169 aa
PF00415
RCC1 178-226 aa
PF13540
RCC1_2 320-348 aa
PF00415
RCC1 335-388 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057777095.1 |
Pfam | PF00415 |
RCC1 | Repeat | 17 | 65 | 2.4e-63 | 211.2 | Regulator of chromosome condensation (RCC1) repeat |
XP_057777095.1 |
Pfam | PF25390 |
WD40_RLD | Repeat | 18 | 387 | 1.6e-75 | 255.4 | RCC1-like domain |
XP_057777095.1 |
Pfam | PF13540 |
RCC1_2 | Repeat | 52 | 81 | 1.9e-39 | 133.2 | Regulator of chromosome condensation (RCC1) repeat |
XP_057777095.1 |
Pfam | PF00415 |
RCC1 | Repeat | 69 | 116 | 2.4e-63 | 211.2 | Regulator of chromosome condensation (RCC1) repeat |
XP_057777095.1 |
Pfam | PF13540 |
RCC1_2 | Repeat | 104 | 133 | 1.9e-39 | 133.2 | Regulator of chromosome condensation (RCC1) repeat |
XP_057777095.1 |
Pfam | PF00415 |
RCC1 | Repeat | 121 | 169 | 2.4e-63 | 211.2 | Regulator of chromosome condensation (RCC1) repeat |
XP_057777095.1 |
Pfam | PF00415 |
RCC1 | Repeat | 178 | 226 | 2.4e-63 | 211.2 | Regulator of chromosome condensation (RCC1) repeat |
XP_057777095.1 |
Pfam | PF13540 |
RCC1_2 | Repeat | 320 | 348 | 1.9e-39 | 133.2 | Regulator of chromosome condensation (RCC1) repeat |
XP_057777095.1 |
Pfam | PF00415 |
RCC1 | Repeat | 335 | 388 | 2.4e-63 | 211.2 | Regulator of chromosome condensation (RCC1) repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。