Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G002713`

染色体: Chr07 坐标: 26571528-26578830 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G002713`
名称	SmilChr07G002713
描述	uncharacterized SmilChr07G002713
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	26571528 - 26578830 / `+`

ID 对照

NCBI Gene ID	`LOC130995724`
GeneID	`130995724`
locus_tag	`-`
NCBI Name	`LOC130995724`
原始查询	`LOC130995724`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Arabidopsis/Rice homolog
描述	heat-inducible transcription repressor [Source:NCBI gene (formerly Entrezgene);Acc:821058]; symbol=AT3G17900; hit=AT3G17900; species=arabidopsis; confidence=high
产物	heat-inducible transcription repressor [Source:NCBI gene (formerly Entrezgene);Acc:821058]; symbol=AT3G17900; hit=AT3G17900; species=arabidopsis; confidence=high
Arabidopsis	`AT3G17900` (AT3G17900) heat-inducible transcription repressor [Source:NCBI gene (formerly Entrezgene);Acc:821058] identity=54.9; qcov=0.99; evalue=0; confidence=high
Rice	`Os03g0152800` - identity=44.4; qcov=1.04; evalue=0; confidence=medium
GO	-
KEGG	-
Pfam	-
InterPro	-
eggNOG	-
NR	GeneID:130995724

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	0.80000	`XP_057777103.1`
2	Cytoplasm	细胞质	0.40000	`XP_057777103.1`
3	Trans-golgi network	Trans-golgi network	0.40000	`XP_057777104.1`
4	Nucleus	细胞核	0.20000	`XP_057777104.1`
5	Autophagosome	Autophagosome	0.20000	`XP_057777104.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:26572106`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B106
`Chr7:26572209`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B2,B75
`Chr7:26575249`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B122,B21,C26,C71
`Chr7:26575272`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B122,B21,C26,C71
`Chr7:26575285`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B123,B52,B86
`Chr7:26575330`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B100,C57,D4
`Chr7:26575397`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B5,B77,B98,D4
`Chr7:26575795`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C28
`Chr7:26577151`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B70,C40,C55
`Chr7:26577161`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B106,B125
`Chr7:26577560`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A23
`Chr7:26577881`	`TA`	`T`	1bp_deletion	frameshift_variant	67	A15,A16,A23,A7,B1,B103,B104,B109,B115,B120,B121,B127,B140,B16,B2,B21,B25,B30,B34,B38,B39,B4,B45,B46,B49,B51,B59,B63,B65,B69,B70,B71,B73,B82,B85,B86,B91,B95,C17,C2,C28,C29,C3,C30,C32,C33,C34,C39,C40,C41,C44,C46,C49,C54,C55,C56,C57,C6,C60,C68,C7,C70,C73,C76,C8,D11,D9

进入 EMS 突变库

预测功能结构域

当前发布数据中，此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057921120.1
TTCATTTTTTTGAGATCAAGTTTAACAAGCATTTTAATTTCTTTTTCCCCTTAAAATGGAGATTTTTGAAAGATCTTAATACTACAGCACCAAAGTAATACGAGGAAGAAGACTGTATTAAGTGTGGCAGCCTTACTCCACTTCAACTTCTCACCGCCAGATCTGCCGCGATTCCGTCTCACCGCAACCGGATTCGTCGCGAACCGCTTCGCGCTGCTCGGGCGAACCGCTGATCTCCGATCAGAAACAATTATAGTGGA...

XM_057921121.1
TTCATTTTTTTGAGATCAAGTTTAACAAGCATTTTAATTTCTTTTTCCCCTTAAAATGGAGATTTTTGAAAGATCTTAATACTACAGCACCAAAGTAATACGAGGAAGAAGACTGTATTAAGTGTGGCAGCCTTACTCCACTTCAACTTCTCACCGCCAGATCTGCCGCGATTCCGTCTCACCGCAACCGGATTCGTCGCGAACCGCTTCGCGCTGCTCGGGCGAACCGCTGATCTCCGATCAGAAACAATTATAGTGGA...

CDS

2 records

下载 CDS FASTA

LOC130995724
ATGAATTTTTTGATGCTGAGGTCCAACAATAGTCAGCCGTCTGTTAAAGAGACTCAGGTAGATGCAAATTATGTGTCCAAAGCTGCTAGTACATTGGAGGGTCTGATTGCTGAAGATGCATTTCCAGAAAGTACATCTTCTGAGCCACGGTACTCAGAAAGTGAAGAATTTGGGAATGAGAATGGCATGGCGGCAGATTCAAGTGGAAAGAATAATCAAGTTGACAGCCACATAGATGTTACAGAAGATAATGGGTCGAT...

Protein

2 records

下载 Protein FASTA

XP_057777103.1
MNFLMLRSNNSQPSVKETQVDANYVSKAASTLEGLIAEDAFPESTSSEPRYSESEEFGNENGMAADSSGKNNQVDSHIDVTEDNGSIVIPCKEVPDNWNEASDILSLRSLDRSFVFPGEQIRILACLSAYKQDTEIITPFKVAAVMNKSGIGKNSKKQNGNIEGEASPVPETIVTNCGDQDNQTDEIMTEEKIDLPKDVSTGESLLRMEDHKRQTEQLLRRFENSHFFVRIAESNEPLWSKRRVGEDCSESSAAFEEQLL...

XP_057777104.1
MNFLMLRSNNSQPSVKETQVDANYVSKAASTLEGLIAEDAFPESTSSEPRYSESEEFGNENGMAADSSGKNNQVDSHIDVTEDNGSIVIPCKEVPDNWNEASDILSLRSLDRSFVFPGEQIRILACLSAYKQDTEIITPFKVAAVMNKSGIGKNSKKQNGNIEGEASPVPETIVTNCGDQDNQTDEIMTEEKIDLPKDVSTGESLLRMEDHKRQTEQLLRRFENSHFFVRIAESNEPLWSKRRVGEDCSESSAAFEEQLL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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