Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G002768`

染色体: Chr07 坐标: 27551548-27554705 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G002768`
名称	SmilChr07G002768
描述	uncharacterized SmilChr07G002768
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	27551548 - 27554705 / `+`

ID 对照

NCBI Gene ID	`LOC130995780`
GeneID	`130995780`
locus_tag	`-`
NCBI Name	`LOC130995780`
原始查询	`LOC130995780`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	CAAX amino terminal protease family protein [Source:NCBI gene (formerly Entrezgene);Acc:837988]; symbol=AT1G14270; hit=AT1G14270; species=arabidopsis; confidence=high
产物	CAAX amino terminal protease family protein [Source:NCBI gene (formerly Entrezgene);Acc:837988]; symbol=AT1G14270; hit=AT1G14270; species=arabidopsis; confidence=high
Arabidopsis	`AT1G14270` (AT1G14270) CAAX amino terminal protease family protein [Source:NCBI gene (formerly Entrezgene);Acc:837988] identity=70.5; qcov=0.914; evalue=6.63e-122; confidence=high
Rice	`Os06g0505400` - identity=31.4; qcov=0.797; evalue=7e-18; confidence=low
GO	GO:0004222 (metalloendopeptidase activity); GO:0016020 (membrane); GO:0071586 (CAAX-box protein processing)
KEGG	-
Pfam	PF02517 (Rce1-like)
InterPro	-
eggNOG	-
NR	GeneID:130995780

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057777175.1`
2	Chloroplast membrane	叶绿体膜	1.00000	`XP_057777175.1`
3	Chloroplast thylakoid	类囊体	0.20000	`XP_057777175.1`
4	Mitochondrion	线粒体	0.20000	`XP_057777176.1`
5	Nucleus	细胞核	0.00000	`XP_057777175.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:27551889`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C47
`Chr7:27552426`	`TG`	`T`	1bp_deletion	frameshift_variant	1	A21
`Chr7:27552426`	`TG`	`T`	1bp_deletion	CDS_variant	1	A21
`Chr7:27554135`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A10
`Chr7:27554162`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B101,B37,B48,B66,D5
`Chr7:27554166`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	C19,C31,C33,C46
`Chr7:27554358`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B8

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057777175.1

339 aa

170

339

Rce1-like

PF02517 Rce1-like 230-316 aa

XP_057777176.1

256 aa

128

256

Rce1-like

PF02517 Rce1-like 147-233 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057777175.1`	Pfam	`PF02517`	Rce1-like	Family	230	316	4.6e-20	72.4	Type II CAAX prenyl endopeptidase Rce1-like
`XP_057777176.1`	Pfam	`PF02517`	Rce1-like	Family	147	233	2.7e-20	73.2	Type II CAAX prenyl endopeptidase Rce1-like

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057921192.1
CTGTTACTTCGGCTGATCTTTCTCGACAAATTTTGCCAAAATTCTTGGGCCTTATCTTCAACTACTTTTCCCAACTATATATACACCTGTAACATCCAAACTCCGCCGAAATCAATTGTAAAATTGTTGAAAATGTCAGTTGCTCTATACACTTCGTATAGTCGCTCCTCAATCTCTACGCTCTCTCTCCCACCCAAATATTGCTCTCCCATCAAAACCCATTTTCGAATAGATCAAAGCCTTCGATTTCCGCCATTAAC...

XM_057921193.1
CAAAAGAATCCGTGGAAAAGGATAAGGGATTAGATTGGCGAATATTGAAACGTTGGGATGTGCCATGGAATTGGCAAACGATCTCTCTAACCTCGCTTGCTTGTGGAATAAGGTGCATTGTGACAGTTTTGTTTTGACAGGACTAATTGAAGCAGCAGCACTAGAATACTCGGGGCTTCAAATTGATGAGTTAAGTTTGGATGAGAAGGCGGAGATCTTGTTTTTGGATCAAGGAATTGCAACAACGGTGGTCCTTGCAG...

CDS

2 records

下载 CDS FASTA

LOC130995780
ATGTCAGTTGCTCTATACACTTCGTATAGTCGCTCCTCAATCTCTACGCTCTCTCTCCCACCCAAATATTGCTCTCCCATCAAAACCCATTTTCGAATAGATCAAAGCCTTCGATTTCCGCCATTAACACATGCTCTAAAGCTTCAAGGCCCAACCACAAGAGGACTCTGCAGCATATGCTGTTATAAGGACAATGATTCAAAAGAATCCGTGGAAAAGGATAAGGGATTAGATTGGCGAATATTGAAACGTTGGGATGT...

LOC130995780
ATGGAATTGGCAAACGATCTCTCTAACCTCGCTTGCTTGTGGAATAAGGTGCATTGTGACAGTTTTGTTTTGACAGGACTAATTGAAGCAGCAGCACTAGAATACTCGGGGCTTCAAATTGATGAGTTAAGTTTGGATGAGAAGGCGGAGATCTTGTTTTTGGATCAAGGAATTGCAACAACGGTGGTCCTTGCAGTTTTGTATAGCCTGACAAAATCATTCTCCCCCCTTCCTAATGACATATATCGATATGATTGGAG...

Protein

2 records

下载 Protein FASTA

XP_057777175.1
MSVALYTSYSRSSISTLSLPPKYCSPIKTHFRIDQSLRFPPLTHALKLQGPTTRGLCSICCYKDNDSKESVEKDKGLDWRILKRWDVPWNWQTISLTSLACGISFVLTGLIEAAALEYSGLQIDELSLDEKAEILFLDQGIATTVVLAVLYSLTKSFSPLPNDIYRYDWRDPFNLQKGWLLWAGIGLGGALAAIAGTGVVMSFFNGEPPQRETDALVRLLPLIGSSSISTAALVGIVGVLAPILEETVFRGFFMVSLTKW...

XP_057777176.1
MELANDLSNLACLWNKVHCDSFVLTGLIEAAALEYSGLQIDELSLDEKAEILFLDQGIATTVVLAVLYSLTKSFSPLPNDIYRYDWRDPFNLQKGWLLWAGIGLGGALAAIAGTGVVMSFFNGEPPQRETDALVRLLPLIGSSSISTAALVGIVGVLAPILEETVFRGFFMVSLTKWLPTPFAVLVSAAVFAGAHLTPGEFPQLFVLGTALGLSYAQTRNLLTPITIHAFWNSGVILLLTFLQLQGYDIKELLKGY

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器