当前解析结果
SmilChr07G002809| 统一新 Gene ID | SmilChr07G002809 |
|---|---|
| 名称 | SmilChr07G002809 |
| 描述 | anaphase-promoting complex subunit 2 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 28082391 - 28089788 / - |
| NCBI Gene ID | LOC130995786 |
|---|---|
| GeneID | 130995786 |
| locus_tag | - |
| NCBI Name | LOC130995786 |
| 原始查询 | LOC130995786 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | anaphase-promoting complex subunit 2 |
| 产物 | anaphase-promoting complex subunit 2 |
| Arabidopsis | AT2G04660 (APC2)anaphase-promoting complex/cyclosome 2 [Source:NCBI gene (formerly Entrezgene);Acc:815008] identity=65.8; qcov=0.99; evalue=0; confidence=high |
| Rice | Os04g0484800 (APC2)- identity=63.4; qcov=0.969; evalue=0; confidence=high |
| GO | GO:0005680 (anaphase-promoting complex); GO:0006511 (ubiquitin-dependent protein catabolic process); GO:0031625 (ubiquitin protein ligase binding) |
| KEGG | smil04120 (Ubiquitin mediated proteolysis - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF08672 (ANAPC2); PF25773 (TPR_ANAPC2); PF26557 (Cullin_AB) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130995786 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057777181.1 |
| 2 | Nucleus | 细胞核 | 0.80000 | XP_057777181.1 |
| 3 | Cytosol | 细胞质基质 | 0.80000 | XP_057777181.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057777181.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057777181.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:28082506 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B106 |
Chr7:28083066 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A11,B126,B135,C33 |
Chr7:28084971 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B125,B137,C17,C45 |
Chr7:28085183 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B42,C52 |
Chr7:28085835 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D9 |
Chr7:28085908 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A24,B6,C35,C40 |
Chr7:28086471 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D9 |
Chr7:28087327 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B5,B62,B84,C79 |
Chr7:28087333 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B72 |
Chr7:28089472 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B8 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057777181.1PF25773
TPR_ANAPC2 355-463 aa
PF26557
Cullin_AB 649-761 aa
PF08672
ANAPC2 821-878 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057777181.1 |
Pfam | PF25773 |
TPR_ANAPC2 | Repeat | 355 | 463 | 1.1e-41 | 142.0 | ANAPC2-like, TPR repeats |
XP_057777181.1 |
Pfam | PF26557 |
Cullin_AB | Domain | 649 | 761 | 4.4e-14 | 53.4 | Cullin alpha+beta domain |
XP_057777181.1 |
Pfam | PF08672 |
ANAPC2 | Domain | 821 | 878 | 3.3e-23 | 82.6 | Anaphase promoting complex (APC) subunit 2 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。