Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G002825`

染色体: Chr07 坐标: 28317106-28319275 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G002825`
名称	SmilChr07G002825
描述	ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	28317106 - 28319275 / `+`

ID 对照

NCBI Gene ID	`LOC130995799`
GeneID	`130995799`
locus_tag	`-`
NCBI Name	`LOC130995799`
原始查询	`LOC130995799`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic
产物	ribulose-1%2C5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase%2C chloroplastic
Arabidopsis	`AT1G14030` (LSMT-L) Rubisco methyltransferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:837964] identity=65.6; qcov=0.952; evalue=0; confidence=high
Rice	`Os09g0411650` (OsSET36) - identity=62.1; qcov=0.885; evalue=0; confidence=high
GO	GO:0005515 (protein binding); GO:0009507 (chloroplast); GO:0016279 (protein-lysine N-methyltransferase activity); GO:0018026 (peptidyl-lysine monomethylation); GO:0030785 ([ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity)
KEGG	-
Pfam	PF00856 (SET); PF09273 (Rubis-subs-bind)
InterPro	-
eggNOG	-
NR	GeneID:130995799

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057777209.1`
2	Chloroplast stroma	叶绿体基质	1.00000	`XP_057777209.1`
3	Nucleus	细胞核	0.00000	`XP_057777209.1`
4	Chromosome	染色体	0.00000	`XP_057777209.1`
5	Centromere	着丝粒	0.00000	`XP_057777209.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:28317376`	`AC`	`A`	1bp_deletion	frameshift_variant	1	B130
`Chr7:28317376`	`AC`	`A`	1bp_deletion	CDS_variant	1	B130
`Chr7:28317379`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B130
`Chr7:28317512`	`AG`	`A`	1bp_deletion	frameshift_variant	2	B12,B55
`Chr7:28317512`	`AG`	`A`	1bp_deletion	CDS_variant	2	B12,B55
`Chr7:28317790`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C78
`Chr7:28317996`	`AT`	`A`	1bp_deletion	frameshift_variant	118	A1,A10,A15,A16,A18,A23,A25,A3,A7,B1,B10,B101,B102,B103,B105,B106,B107,B108,B109,B11,B114,B115,B117,B12,B123,B124,B126,B128,B13,B130,B133,B139,B15,B16,B17,B18,B19,B23,B27,B29,B30,B38,B39,B4,B41,B42,B43,B46,B47,B5,B50,B51,B55,B56,B57,B58,B62,B63,B65,B66,B72,B74,B76,B78,B84,B88,B90,B91,B92,B96,B98,C10,C13,C14,C15,C16,C18,C19,C20,C21,C22,C23,C27,C28,C3,C30,C31,C32,C34,C35,C4,C46,C47,C49,C51,C59,C63,C65,C68,C7,C71,C72,C74,C75,C76,C79,C8,C81,C83,C84,C86,C87,D1,D10,D11,D4,D5,D9
`Chr7:28318122`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B106

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057777209.1

504 aa

252

504

SET

Rubis-subs-bind

PF00856 SET 86-302 aa PF09273 Rubis-subs-bind 336-461 aa

XP_057777210.1

495 aa

248

495

SET

Rubis-subs-bind

PF00856 SET 86-293 aa PF09273 Rubis-subs-bind 327-452 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057777209.1`	Pfam	`PF00856`	SET	Family	86	302	1e-05	26.6	SET domain
`XP_057777209.1`	Pfam	`PF09273`	Rubis-subs-bind	Domain	336	461	1.4e-33	117.1	Rubisco LSMT substrate-binding
`XP_057777210.1`	Pfam	`PF00856`	SET	Family	86	293	7.9e-06	27.0	SET domain
`XP_057777210.1`	Pfam	`PF09273`	Rubis-subs-bind	Domain	327	452	1.3e-33	117.2	Rubisco LSMT substrate-binding

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057921226.1
CGTTTACATTACTACATGAGACTAATAATTAGGGGAACCAAATTTCTTATTGAAAAAAAAAAAGGAGGGAGAGAGAAGAGGAGGGAAAATGGTTTATCCAAAACCAAAATCTTCAACAACCTGAACCTCATCTCCCAACTATACAGAAAAAACTGATACAATACATTCTAGTAGCAGGGGTAAGAATCAAATCGAAGAAAGCGTTAATGGCGTCTCTCTCCACCATCCACCATCTAAAACCCTCATCAATCCTCAAAACC...

XM_057921227.1
CGTTTACATTACTACATGAGACTAATAATTAGGGGAACCAAATTTCTTATTGAAAAAAAAAAAGGAGGGAGAGAGAAGAGGAGGGAAAATGGTTTATCCAAAACCAAAATCTTCAACAACCTGAACCTCATCTCCCAACTATACAGAAAAAACTGATACAATACATTCTAGTAGCAGGGGTAAGAATCAAATCGAAGAAAGCGTTAATGGCGTCTCTCTCCACCATCCACCATCTAAAACCCTCATCAATCCTCAAAACC...

CDS

2 records

下载 CDS FASTA

LOC130995799
ATGGCGTCTCTCTCCACCATCCACCATCTAAAACCCTCATCAATCCTCAAAACCCCTCAAAATTACCGCTTCTCTCCCTCTAAAACAAGACCAACTGTCCATCATTTCAACAACCGATCACTCTCGCCTAAATCCGTTCTCTCCACAGAAACCGAACCCAAAATTCCGCAAAAAGTGGAGAGATTCTGGCAATGGCTCCAAGATGAAGGGATTGTCTCGTCTAAGACTCCCGTGAAGCCGGGAATCGTGCCAGAGGGGCT...

Protein

2 records

下载 Protein FASTA

XP_057777209.1
MASLSTIHHLKPSSILKTPQNYRFSPSKTRPTVHHFNNRSLSPKSVLSTETEPKIPQKVERFWQWLQDEGIVSSKTPVKPGIVPEGLGLVATRDISRNDVVLEVPRRLWINPDAAASSDIGTLCSGLKPWISVALLLLRERLKGDDSKWKHYLDVLPQATDSTIYWSEEELLEIQGIEIFDTCEGTQLLSTTLSVKEYVQNEFLKIEEEIILPNKQLFPCAVTLDDFFWAFGMLRSRAFSRIRNQNLVIIPFADLINHSS...

XP_057777210.1
MASLSTIHHLKPSSILKTPQNYRFSPSKTRPTVHHFNNRSLSPKSVLSTETEPKIPQKVERFWQWLQDEGIVSSKTPVKPGIVPEGLGLVATRDISRNDVVLEVPRRLWINPDAAASSDIGTLCSGLKPWISVALLLLRERLKGDDSKWKHYLDVLPQATDSTIYWSEEELLEIQGTQLLSTTLSVKEYVQNEFLKIEEEIILPNKQLFPCAVTLDDFFWAFGMLRSRAFSRIRNQNLVIIPFADLINHSSKVTTEDHAH...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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