Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G002799`

染色体: Chr07 坐标: 28000732-28003553 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G002799`
名称	SmilChr07G002799
描述	uncharacterized SmilChr07G002799
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	28000732 - 28003553 / `-`

ID 对照

NCBI Gene ID	`LOC130995809`
GeneID	`130995809`
locus_tag	`-`
NCBI Name	`LOC130995809`
原始查询	`LOC130995809`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ArsM3; symbol=ArsM3; hit=Os02g0744100; species=rice; confidence=high
产物	ArsM3; symbol=ArsM3; hit=Os02g0744100; species=rice; confidence=high
Arabidopsis	`AT1G69523` (AT1G69523) S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:843286] identity=60.2; qcov=0.97; evalue=7.42e-84; confidence=high
Rice	`Os02g0744100` (ArsM3) - identity=62.4; qcov=1; evalue=8.35e-87; confidence=high
GO	GO:0008757 (S-adenosylmethionine-dependent methyltransferase activity)
KEGG	-
Pfam	PF01209 (Ubie_methyltran); PF08241 (Methyltransf_11); PF08242 (Methyltransf_12); PF13489 (Methyltransf_23); PF13649 (Methyltransf_25); PF13847 (Methyltransf_31)
InterPro	-
eggNOG	-
NR	GeneID:130995809

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057777228.1`
2	Mitochondrion	线粒体	1.00000	`XP_057777231.1`
3	Chloroplast thylakoid	类囊体	1.00000	`XP_057777228.1`
4	Chloroplast thylakoid membrane	类囊体膜	0.60000	`XP_057777228.1`
5	Mitochondrion outer membrane	线粒体外膜	0.20000	`XP_057777231.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:28001848`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B100,C57,D4
`Chr7:28002567`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C14
`Chr7:28002765`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B114,C7
`Chr7:28003256`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B117,B140,B78,C2,C48

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057777228.1

306 aa

153

306

Methyltransf_23

Methyltransf_31

Methyltransf_25

Methyltransf_12

Methyltransf_11

Ubie_methyltran

PF13489 Methyltransf_23 116-240 aa PF13847 Methyltransf_31 131-263 aa PF13649 Methyltransf_25 135-231 aa PF08242 Methyltransf_12 136-232 aa PF08241 Methyltransf_11 136-235 aa PF01209 Ubie_methyltran 156-238 aa

XP_057777229.1

247 aa

124

247

Methyltransf_23

Methyltransf_31

Methyltransf_25

Methyltransf_12

Methyltransf_11

Ubie_methyltran

PF13489 Methyltransf_23 57-181 aa PF13847 Methyltransf_31 72-205 aa PF13649 Methyltransf_25 76-172 aa PF08242 Methyltransf_12 77-173 aa PF08241 Methyltransf_11 77-176 aa PF01209 Ubie_methyltran 97-179 aa

XP_057777230.1

233 aa

116

233

Methyltransf_25

Methyltransf_11

Ubie_methyltran

Methyltransf_31

PF13649 Methyltransf_25 113-158 aa PF08241 Methyltransf_11 113-162 aa PF01209 Ubie_methyltran 116-165 aa PF13847 Methyltransf_31 117-192 aa

XP_057777231.1

197 aa

197

Methyltransf_23

Methyltransf_31

Methyltransf_25

Methyltransf_12

Methyltransf_11

Ubie_methyltran

PF13489 Methyltransf_23 11-131 aa PF13847 Methyltransf_31 22-156 aa PF13649 Methyltransf_25 26-122 aa PF08242 Methyltransf_12 27-123 aa PF08241 Methyltransf_11 27-126 aa PF01209 Ubie_methyltran 47-129 aa

XP_057777232.1

197 aa

197

Methyltransf_23

Methyltransf_31

Methyltransf_25

Methyltransf_12

Methyltransf_11

Ubie_methyltran

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057777228.1`	Pfam	`PF13489`	Methyltransf_23	Domain	116	240	4.6e-11	43.4	Methyltransferase domain
`XP_057777228.1`	Pfam	`PF13847`	Methyltransf_31	Domain	131	263	1.1e-13	51.9	Methyltransferase domain
`XP_057777228.1`	Pfam	`PF13649`	Methyltransf_25	Domain	135	231	5e-19	69.5	Methyltransferase domain
`XP_057777228.1`	Pfam	`PF08242`	Methyltransf_12	Domain	136	232	7e-14	53.1	Methyltransferase domain
`XP_057777228.1`	Pfam	`PF08241`	Methyltransf_11	Domain	136	235	3.8e-23	82.7	Methyltransferase domain
`XP_057777228.1`	Pfam	`PF01209`	Ubie_methyltran	Family	156	238	1.8e-11	44.6	ubiE/COQ5 methyltransferase family
`XP_057777229.1`	Pfam	`PF13489`	Methyltransf_23	Domain	57	181	2.9e-11	44.1	Methyltransferase domain
`XP_057777229.1`	Pfam	`PF13847`	Methyltransf_31	Domain	72	205	6.5e-14	52.7	Methyltransferase domain
`XP_057777229.1`	Pfam	`PF13649`	Methyltransf_25	Domain	76	172	3.3e-19	70.1	Methyltransferase domain
`XP_057777229.1`	Pfam	`PF08242`	Methyltransf_12	Domain	77	173	4.4e-14	53.7	Methyltransferase domain
`XP_057777229.1`	Pfam	`PF08241`	Methyltransf_11	Domain	77	176	2.3e-23	83.4	Methyltransferase domain
`XP_057777229.1`	Pfam	`PF01209`	Ubie_methyltran	Family	97	179	1e-11	45.4	ubiE/COQ5 methyltransferase family
`XP_057777230.1`	Pfam	`PF13649`	Methyltransf_25	Domain	113	158	2e-07	32.3	Methyltransferase domain
`XP_057777230.1`	Pfam	`PF08241`	Methyltransf_11	Domain	113	162	5.5e-13	50.1	Methyltransferase domain
`XP_057777230.1`	Pfam	`PF01209`	Ubie_methyltran	Family	116	165	3e-06	27.5	ubiE/COQ5 methyltransferase family
`XP_057777230.1`	Pfam	`PF13847`	Methyltransf_31	Domain	117	192	1.7e-06	28.6	Methyltransferase domain
`XP_057777231.1`	Pfam	`PF13489`	Methyltransf_23	Domain	11	131	2.2e-11	44.4	Methyltransferase domain
`XP_057777231.1`	Pfam	`PF13847`	Methyltransf_31	Domain	22	156	3.7e-14	53.4	Methyltransferase domain
`XP_057777231.1`	Pfam	`PF13649`	Methyltransf_25	Domain	26	122	2e-19	70.8	Methyltransferase domain
`XP_057777231.1`	Pfam	`PF08242`	Methyltransf_12	Domain	27	123	2.4e-14	54.5	Methyltransferase domain
`XP_057777231.1`	Pfam	`PF08241`	Methyltransf_11	Domain	27	126	1.4e-23	84.0	Methyltransferase domain
`XP_057777231.1`	Pfam	`PF01209`	Ubie_methyltran	Family	47	129	6.9e-12	45.9	ubiE/COQ5 methyltransferase family
`XP_057777232.1`	Pfam	`PF13489`	Methyltransf_23	Domain	11	131	2.2e-11	44.4	Methyltransferase domain
`XP_057777232.1`	Pfam	`PF13847`	Methyltransf_31	Domain	22	156	3.7e-14	53.4	Methyltransferase domain
`XP_057777232.1`	Pfam	`PF13649`	Methyltransf_25	Domain	26	122	2e-19	70.8	Methyltransferase domain
`XP_057777232.1`	Pfam	`PF08242`	Methyltransf_12	Domain	27	123	2.4e-14	54.5	Methyltransferase domain
`XP_057777232.1`	Pfam	`PF08241`	Methyltransf_11	Domain	27	126	1.4e-23	84.0	Methyltransferase domain
`XP_057777232.1`	Pfam	`PF01209`	Ubie_methyltran	Family	47	129	6.9e-12	45.9	ubiE/COQ5 methyltransferase family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XM_057921245.1
GTAAACAGACAGAAATGATTGAATTAATTTTTTTGAACTTGAAATGATTGAATTATTGAATCTGAAGATGTGAACTAAGTGATAAAGCTTCTAAATAGTTAAAGGAAGCCCCCAGGAATCTTGGATAGTCAAACAAAAGCCAATCTTCACACAAACAAACACCTCCGTGATGACGCTTCCTCATTCACCTAATCTTAACTCATGGCTCTCTTTCAATTCCGCCATCACACAAAATGCACCAACGTGCGGTGCTCCGAAAA...

XM_057921247.1
CTTCTAAATAGTTAAAGGAAGCCCCCAGGAATCTTGGATAGTCAAACAAAAGCCAATCTTCACACAAACAAACACCTCCGTGATGACGCTTCCTCATTCACCTAATCTTAACTCATGGCTCTCTTTCAATTCCGCCATCACACAAAATGCACCAACGTGCGGTGCTCCGAAAAATTCGAAGAGAATCGTTAGAGATTTGTCGGAAAATGGCGGCGGCAGCCGCAAATGCTGCTCGTGTTGTCCCAGAAGGCATTTTCTTG...

CDS

5 records

下载 CDS FASTA

LOC130995809
ATGACGCTTCCTCATTCACCTAATCTTAACTCATGGCTCTCTTTCAATTCCGCCATCACACAAAATGCACCAACGTGCGGTGCTCCGAAAAATTCGAAGAGAATCGTTAGAGATTTGTCGGAAAATGGCGGCGGCAGCCGCAAATGCTGCTCGTGTTGTCCCAGAAGGCATTTTCTTGGAGCAGCTGTAGGTGCAGGCTTACTGCCAACACTGCCGTCATTTGCCTCTCACAAAGATTCTCAAGATTCTACGACAATGTT...

Protein

5 records

下载 Protein FASTA

XP_057777228.1
MTLPHSPNLNSWLSFNSAITQNAPTCGAPKNSKRIVRDLSENGGGSRKCCSCCPRRHFLGAAVGAGLLPTLPSFASHKDSQDSTTMLNRIHPPRPDWYEELYASAMDKTMRSYEAEIAGYKSELFANLRGKAERIVEIGVGTGPNLKYYADYPDILVFGVDPNRKMQKYAEAAAETAGFPPSNFRFMQAVAEALPLKDASVDAVVGTLVLCSVKDVDQALQEVRRVLKPGGLYIFVEHVAAKDGTLLRFVQGILDPLQQT...

XP_057777229.1
MLLVLSQKAFSWSSCRCRLTANTAVICLSQRFSRFYDWYEELYASAMDKTMRSYEAEIAGYKSELFANLRGKAERIVEIGVGTGPNLKYYADYPDILVFGVDPNRKMQKYAEAAAETAGFPPSNFRFMQAVAEALPLKDASVDAVVGTLVLCSVKDVDQALQEVRRVLKPGGLYIFVEHVAAKDGTLLRFVQGILDPLQQTVADGCHLTRHTATNIATAGFADLDVNQAVLSTASLINPHVYGVAYK

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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