当前解析结果
SmilChr07G002792| 统一新 Gene ID | SmilChr07G002792 |
|---|---|
| 名称 | SmilChr07G002792 |
| 描述 | transcription factor MYB105-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 27809258 - 27811315 / - |
| NCBI Gene ID | LOC130995813 |
|---|---|
| GeneID | 130995813 |
| locus_tag | - |
| NCBI Name | LOC130995813 |
| 原始查询 | LOC130995813 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | transcription factor MYB105-like |
| 产物 | transcription factor MYB105-like |
| Arabidopsis | AT1G69560 (MYB105)myb domain protein 105 [Source:NCBI gene (formerly Entrezgene);Acc:843292] identity=53.4; qcov=0.869; evalue=1.24e-78; confidence=high |
| Rice | Os01g0274800 (CSA)- identity=92.3; qcov=0.402; evalue=7.4e-78; confidence=low |
| GO | GO:0000978 (RNA polymerase II cis-regulatory region sequence-specific DNA binding); GO:0000981 (DNA-binding transcription factor activity, RNA polymerase II-specific); GO:0005634 (nucleus); GO:0006355 (regulation of DNA-templated transcription) |
| KEGG | - |
| Pfam | PF00249 (Myb_DNA-binding); PF13921 (Myb_DNA-bind_6) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130995813 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057777235.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057777235.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057777235.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057777235.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057777235.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:27810218 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B125,B137,C17,C45 |
Chr7:27810222 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B73,C49 |
Chr7:27810305 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B49 |
Chr7:27810360 |
C |
T |
EMS_canonical_SNV | stop_gained | 52 | A20,A22,A4,A5,A7,B104,B109,B11,B115,B121,B129,B130,B133,B140,B25,B34,B35,B4,B40,B45,B52,B55,B59,B64,B69,B7,B73,B75,B87,B89,B96,C12,C27,C28,C29,C31,C35,C36,C40,C41,C47,C49,C50,C55,C64,C66,C67,C76,C78,C87,C9,D4 |
Chr7:27810375 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B45,C38,C39 |
Chr7:27810380 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B45,C38,C39 |
Chr7:27810455 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C38 |
Chr7:27810464 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A20,B130,C41,C78,C9 |
Chr7:27810683 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B121,B18,B33,C39 |
Chr7:27810839 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C46,C82 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057777235.1PF00249
Myb_DNA-binding 48-94 aa
PF13921
Myb_DNA-bind_6 51-111 aa
PF00249
Myb_DNA-binding 100-142 aa
PF13921
Myb_DNA-bind_6 103-149 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057777235.1 |
Pfam | PF00249 |
Myb_DNA-binding | Domain | 48 | 94 | 1.5e-34 | 118.6 | Myb-like DNA-binding domain |
XP_057777235.1 |
Pfam | PF13921 |
Myb_DNA-bind_6 | Domain | 51 | 111 | 1.2e-25 | 90.1 | Myb-like DNA-binding domain |
XP_057777235.1 |
Pfam | PF00249 |
Myb_DNA-binding | Domain | 100 | 142 | 1.5e-34 | 118.6 | Myb-like DNA-binding domain |
XP_057777235.1 |
Pfam | PF13921 |
Myb_DNA-bind_6 | Domain | 103 | 149 | 1.2e-25 | 90.1 | Myb-like DNA-binding domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。