当前解析结果
SmilChr07G002797| 统一新 Gene ID | SmilChr07G002797 |
|---|---|
| 名称 | SmilChr07G002797 |
| 描述 | zinc finger BED domain-containing protein RICESLEEPER 2-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 27927196 - 27928037 / + |
| NCBI Gene ID | LOC130995818 |
|---|---|
| GeneID | 130995818 |
| locus_tag | - |
| NCBI Name | LOC130995818 |
| 原始查询 | LOC130995818 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | zinc finger BED domain-containing protein RICESLEEPER 2-like |
| 产物 | zinc finger BED domain-containing protein RICESLEEPER 2-like |
| Arabidopsis | AT3G42170 (DAYSLEEPER)BED zinc finger and hAT dimerization domain-containing protein DAYSLEEPER [Source:NCBI gene (formerly Entrezgene);Acc:3769417] identity=31.4; qcov=0.877; evalue=2.38e-26; confidence=low |
| Rice | Os05g0583100- identity=34; qcov=0.924; evalue=6.48e-34; confidence=low |
| GO | GO:0003677 (DNA binding); GO:0046983 (protein dimerization activity) |
| KEGG | - |
| Pfam | PF05699 (Dimer_Tnp_hAT); PF14372 (hAT-like_RNase-H) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130995818 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057777245.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057777245.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057777245.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057777245.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057777245.1 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057777245.1PF14372
hAT-like_RNase-H 1-69 aa
PF05699
Dimer_Tnp_hAT 131-214 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057777245.1 |
Pfam | PF14372 |
hAT-like_RNase-H | Domain | 1 | 69 | 5.3e-18 | 65.8 | hAT-like transposase, RNase-H fold |
XP_057777245.1 |
Pfam | PF05699 |
Dimer_Tnp_hAT | Domain | 131 | 214 | 2.8e-29 | 101.4 | hAT family C-terminal dimerisation region |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。