当前解析结果
SmilChr07G002879| 统一新 Gene ID | SmilChr07G002879 |
|---|---|
| 名称 | SmilChr07G002879 |
| 描述 | pentatricopeptide repeat-containing protein At1g69290 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 28986552 - 28988799 / + |
| NCBI Gene ID | LOC130995855 |
|---|---|
| GeneID | 130995855 |
| locus_tag | - |
| NCBI Name | LOC130995855 |
| 原始查询 | LOC130995855 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | pentatricopeptide repeat-containing protein At1g69290 |
| 产物 | pentatricopeptide repeat-containing protein At1g69290 |
| Arabidopsis | AT1G69290 (AT1G69290)Pentatricopeptide repeat (PPR) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:843260] identity=61.1; qcov=1; evalue=0; confidence=high |
| Rice | Os01g0788900- identity=53.1; qcov=0.992; evalue=0; confidence=high |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF23276 (TPR_24); PF25245 (TPR_At1g68980) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130995855 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057777285.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057777285.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057777285.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057777285.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057777285.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:28986697 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr7:28986993 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B30 |
Chr7:28987061 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B104,B53 |
Chr7:28987121 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B111,B68 |
Chr7:28987139 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B136,B34,C38 |
Chr7:28987186 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C44 |
Chr7:28987362 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C10 |
Chr7:28987967 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr7:28988069 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B108,B119,B122,B81 |
Chr7:28988101 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C51 |
Chr7:28988151 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D3 |
Chr7:28988261 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B125 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057777285.1PF25245
TPR_At1g68980 58-213 aa
PF13812
PPR_3 419-463 aa
PF01535
PPR 435-462 aa
PF23276
TPR_24 471-545 aa
PF13812
PPR_3 498-549 aa
PF01535
PPR 506-529 aa
PF12854
PPR_1 506-529 aa
PF13041
PPR_2 506-549 aa
PF01535
PPR 540-569 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057777285.1 |
Pfam | PF25245 |
TPR_At1g68980 | Repeat | 58 | 213 | 3.9e-72 | 242.2 | At1g68980, TPR repeats |
XP_057777285.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 419 | 463 | 4.4e-16 | 59.4 | Pentatricopeptide repeat domain |
XP_057777285.1 |
Pfam | PF01535 |
PPR | Repeat | 435 | 462 | 8.7e-19 | 67.1 | PPR repeat |
XP_057777285.1 |
Pfam | PF23276 |
TPR_24 | Repeat | 471 | 545 | 5.8e-12 | 46.4 | Pentatricopeptide repeat-containing protein |
XP_057777285.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 498 | 549 | 4.4e-16 | 59.4 | Pentatricopeptide repeat domain |
XP_057777285.1 |
Pfam | PF01535 |
PPR | Repeat | 506 | 529 | 8.7e-19 | 67.1 | PPR repeat |
XP_057777285.1 |
Pfam | PF12854 |
PPR_1 | Repeat | 506 | 529 | 3.2e-16 | 59.5 | PPR repeat |
XP_057777285.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 506 | 549 | 9.3e-30 | 103.2 | PPR repeat family |
XP_057777285.1 |
Pfam | PF01535 |
PPR | Repeat | 540 | 569 | 8.7e-19 | 67.1 | PPR repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。