Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G002903`

染色体: Chr07 坐标: 29417005-29422041 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G002903`
名称	SmilChr07G002903
描述	uncharacterized SmilChr07G002903
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	29417005 - 29422041 / `+`

ID 对照

NCBI Gene ID	`LOC130995856`
GeneID	`130995856`
locus_tag	`-`
NCBI Name	`LOC130995856`
原始查询	`LOC130995856`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Asparagine synthase family protein [Source:NCBI gene (formerly Entrezgene);Acc:5007865]; symbol=AT2G03667; hit=AT2G03667; species=arabidopsis; confidence=high
产物	Asparagine synthase family protein [Source:NCBI gene (formerly Entrezgene);Acc:5007865]; symbol=AT2G03667; hit=AT2G03667; species=arabidopsis; confidence=high
Arabidopsis	`AT2G03667` (AT2G03667) Asparagine synthase family protein [Source:NCBI gene (formerly Entrezgene);Acc:5007865] identity=57.7; qcov=0.992; evalue=0; confidence=high
Rice	`Os12g0574900` - identity=44.1; qcov=0.26; evalue=6.96e-37; confidence=weak
GO	GO:0004066 (asparagine synthase (glutamine-hydrolyzing) activity); GO:0006529 (GO:0006529)
KEGG	-
Pfam	PF00733 (Asn_synthase); PF13537 (GATase_7)
InterPro	-
eggNOG	-
NR	GeneID:130995856

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057777286.1`
2	Cytoplasm	细胞质	0.80000	`XP_057777286.1`
3	Nucleus	细胞核	0.00000	`XP_057777286.1`
4	Chromosome	染色体	0.00000	`XP_057777286.1`
5	Centromere	着丝粒	0.00000	`XP_057777286.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:29417348`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C10
`Chr7:29417353`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr7:29418187`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr7:29418202`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C77
`Chr7:29418496`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B133
`Chr7:29418830`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B104,B72,B88,C65,C71
`Chr7:29418921`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B72,B88
`Chr7:29419239`	`A`	`AAC`	2bp_insertion	frameshift_variant	1	C37
`Chr7:29419239`	`A`	`AAC`	2bp_insertion	CDS_variant	1	C37
`Chr7:29420783`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B7
`Chr7:29421497`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr7:29421750`	`C`	`T`	EMS_canonical_SNV	stop_gained	2	B40,B76

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057777286.1

655 aa

328

655

GATase_7

Asn_synthase

PF13537 GATase_7 112-225 aa PF00733 Asn_synthase 526-620 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057777286.1`	Pfam	`PF13537`	GATase_7	Domain	112	225	1.8e-08	35.2	Glutamine amidotransferase domain
`XP_057777286.1`	Pfam	`PF00733`	Asn_synthase	Domain	526	620	1.5e-16	61.8	Asparagine synthase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057921303.1
TCAGAGAGCAATTGAGTTTTTCTGACATTGAGAAAAAACCCTAAACAAATTGTTTAGGTATGCAGCTTGCAGAGATCAATTAGGTTTTATTTGACAATTGGGAATAGAGAGGATGTGTGGAATAGCACTGATTATTTCTGGAATTCAGATAGACTTATCTTTTCTGATACCCAATTACACTTGCCCGTCCACTCAATTTTGTGATCTGTCTTTAGTGTCAGAGGATGATATAAAAGCAGCTCTGCAGAGGAGAGGCCCCG...

CDS

1 records

下载 CDS FASTA

LOC130995856
ATGTGTGGAATAGCACTGATTATTTCTGGAATTCAGATAGACTTATCTTTTCTGATACCCAATTACACTTGCCCGTCCACTCAATTTTGTGATCTGTCTTTAGTGTCAGAGGATGATATAAAAGCAGCTCTGCAGAGGAGAGGCCCCGACAGCTTAGGAGCTCAAATTGTTAAACTTTATTCAGAAGCTTCTTCATATGATACGTTGAAAGATTTTATAGTGCAATCTTGTGTTCAGAAAGAAGTGGCTGCGGAGAGTGG...

Protein

1 records

下载 Protein FASTA

XP_057777286.1
MCGIALIISGIQIDLSFLIPNYTCPSTQFCDLSLVSEDDIKAALQRRGPDSLGAQIVKLYSEASSYDTLKDFIVQSCVQKEVAAESGCGSEFNGELLFIGATLQLRGVNPVVQPLIDGFRNVLVYNGEIYGGIQFKSDSNDTEILMQSLERCCSCISHENGGSTACSEGNKESVPQLLSKIRGPWALIYWQDSSKTLWFGRDAFGRRSLLVHWPTLDDSRLLLSSVSPPSSTQKHYDTEEEKGKTELDFWEELSCGVYSV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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