Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G002842`

染色体: Chr07 坐标: 28516198-28519967 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G002842`
名称	SmilChr07G002842
描述	uncharacterized SmilChr07G002842
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	28516198 - 28519967 / `-`

ID 对照

NCBI Gene ID	`LOC130995864`
GeneID	`130995864`
locus_tag	`-`
NCBI Name	`LOC130995864`
原始查询	`LOC130995864`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	beta-hexosaminidase (DUF1336) [Source:NCBI gene (formerly Entrezgene);Acc:837957]; symbol=AT1G13970; hit=AT1G13970; species=arabidopsis; confidence=high
产物	beta-hexosaminidase (DUF1336) [Source:NCBI gene (formerly Entrezgene);Acc:837957]; symbol=AT1G13970; hit=AT1G13970; species=arabidopsis; confidence=high
Arabidopsis	`AT1G13970` (AT1G13970) beta-hexosaminidase (DUF1336) [Source:NCBI gene (formerly Entrezgene);Acc:837957] identity=48.3; qcov=1.02; evalue=3.63e-152; confidence=high
Rice	`Os12g0577600` - identity=62.9; qcov=0.601; evalue=6.22e-142; confidence=high
GO	-
KEGG	-
Pfam	PF07059 (EDR2_C)
InterPro	-
eggNOG	-
NR	GeneID:130995864

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	0.80000	`XP_057777309.1`
2	Cytoplasm	细胞质	0.40000	`XP_057777305.1`
3	Golgi apparatus	高尔基体	0.20000	`XP_057777305.1`
4	Nucleus	细胞核	0.00000	`XP_057777309.1`
5	Chromosome	染色体	0.00000	`XP_057777309.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:28516692`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B140,B26,C2
`Chr7:28517079`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B128,C17,C45,C46,C61
`Chr7:28517354`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B128,C17,C45,C61
`Chr7:28517355`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B68
`Chr7:28517678`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C46
`Chr7:28517856`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B128,C17,C45,C61
`Chr7:28518049`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr7:28518126`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr7:28518180`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr7:28518478`	`GC`	`G`	1bp_deletion	frameshift_variant	1	D11
`Chr7:28518478`	`GC`	`G`	1bp_deletion	CDS_variant	1	D11
`Chr7:28518703`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B60

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057777305.1

517 aa

258

517

EDR2_C

PF07059 EDR2_C 259-500 aa

XP_057777306.1

517 aa

258

517

EDR2_C

PF07059 EDR2_C 259-500 aa

XP_057777307.1

517 aa

258

517

EDR2_C

PF07059 EDR2_C 259-500 aa

XP_057777308.1

517 aa

258

517

EDR2_C

PF07059 EDR2_C 259-500 aa

XP_057777309.1

516 aa

258

516

EDR2_C

PF07059 EDR2_C 258-499 aa

XP_057777310.1

516 aa

258

516

EDR2_C

PF07059 EDR2_C 258-499 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057777305.1`	Pfam	`PF07059`	EDR2_C	Domain	259	500	4.3e-58	197.4	Protein ENHANCED DISEASE RESISTANCE 2, C-terminal
`XP_057777306.1`	Pfam	`PF07059`	EDR2_C	Domain	259	500	4.3e-58	197.4	Protein ENHANCED DISEASE RESISTANCE 2, C-terminal
`XP_057777307.1`	Pfam	`PF07059`	EDR2_C	Domain	259	500	4.3e-58	197.4	Protein ENHANCED DISEASE RESISTANCE 2, C-terminal
`XP_057777308.1`	Pfam	`PF07059`	EDR2_C	Domain	259	500	4.3e-58	197.4	Protein ENHANCED DISEASE RESISTANCE 2, C-terminal
`XP_057777309.1`	Pfam	`PF07059`	EDR2_C	Domain	258	499	4.3e-58	197.4	Protein ENHANCED DISEASE RESISTANCE 2, C-terminal
`XP_057777310.1`	Pfam	`PF07059`	EDR2_C	Domain	258	499	4.3e-58	197.4	Protein ENHANCED DISEASE RESISTANCE 2, C-terminal

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

6 records

下载 cDNA FASTA

XM_057921326.1
TTTGTGTGTGCGTGTGAGTGTCTTTGTTTTTCTGGTAAACATTTGTTTATTTGGATTAAATTCAATACTGATGCATTCAACAGTTGTATTAAAATACCGAATATTTTAACATTGTTAGTTCTTTACAGCACTCTAATCATTTGAAGTCATTTTCATGACTTGAAATTTTTGTAGTTTGTTAGGGAGTTCTTGAAAAAAATTGACAACAACCCTTTTGTTTGTTTAAGTTTATAAATAAACTTTTTATGGAGTTGGGGTTT...

XM_057921322.1
CCGAATATTTTAACATTGTTAGTTCTTTACAGCACTCTAATCATTTGAAGTCATTTTCATGACTTGAAATTTTTGTAGTTTGTTAGGGAGTTCTTGAAAAAAATTGACAACAACCCTTTTGTTTGTTTAAGTTTATAAATAAACTTTTTATGGAGTTGGGGTTTCTCCTACAATCATATTTCTGTTAAGGTGGGAAAGAACCAAAATATTCATACAAAAGTTGAATTTTTTTACTTTTTGGAGAAAAATGATTTTTTTTA...

CDS

6 records

下载 CDS FASTA

LOC130995864
ATGGGTAGCTGTGTTTCTAAGCCTAACAGGAAGCTGAAATCAAAGGCGAAACACATCTATAGGTCATGTAAAATCCGCAGAAAGACAGCTCGCTCAAGTGTCATAGCGCCTATAGACCAACCCCCCGATGACGGTGTCGATGCAGATGAATTCTGTTTCCATGAATATGTTATGGTCGACATTACAGATGGTCGGACAGCAGTCTGCAGAAGGTACGAGGTGCAGAGCCCCGAATTCCAGTTTCCTGAGGTGGAACTGAG...

Protein

6 records

下载 Protein FASTA

XP_057777305.1
MGSCVSKPNRKLKSKAKHIYRSCKIRRKTARSSVIAPIDQPPDDGVDADEFCFHEYVMVDITDGRTAVCRRYEVQSPEFQFPEVELRHNQAVADTGISRDEVWFDTLSILDSDTDEDFVSVVGDSFSSSDSHTESSINGCNEQAVEFGKQNTDFSNSAKADDDAFATSKVGLHHSEETNSAQFVPSMDVADIKQPPYHQGGSITRTRKKSAVAMVAVRRKSDDGDAPAGFCSSEKYLYNPRAGLLIPKSMGEKPSRGSWC...

XP_057777306.1
MGSCVSKPNRKLKSKAKHIYRSCKIRRKTARSSVIAPIDQPPDDGVDADEFCFHEYVMVDITDGRTAVCRRYEVQSPEFQFPEVELRHNQAVADTGISRDEVWFDTLSILDSDTDEDFVSVVGDSFSSSDSHTESSINGCNEQAVEFGKQNTDFSNSAKADDDAFATSKVGLHHSEETNSAQFVPSMDVADIKQPPYHQGGSITRTRKKSAVAMVAVRRKSDDGDAPAGFCSSEKYLYNPRAGLLIPKSMGEKPSRGSWC...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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