Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G003776`

染色体: Chr01 坐标: 56159065-56164280 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G003776`
名称	SmilChr01G003776
描述	integrin-linked protein kinase 1-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	56159065 - 56164280 / `+`

ID 对照

NCBI Gene ID	`LOC130995876`
GeneID	`130995876`
locus_tag	`-`
NCBI Name	`LOC130995876`
原始查询	`LOC130995876`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	integrin-linked protein kinase 1-like
产物	integrin-linked protein kinase 1-like
Arabidopsis	`AT2G43850` (AT2G43850) Integrin-linked protein kinase family [Source:NCBI gene (formerly Entrezgene);Acc:818989] identity=72.3; qcov=1; evalue=0; confidence=high
Rice	`Os02g0608500` - identity=58.1; qcov=1.06; evalue=0; confidence=high
GO	GO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation)
KEGG	-
Pfam	PF00023 (Ank); PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr); PF12796 (Ank_2); PF13606 (Ank_3); PF13637 (Ank_4); PF13857 (Ank_5)
InterPro	-
eggNOG	-
NR	GeneID:130995876

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057777343.1`
2	Cytoplasm	细胞质	0.80000	`XP_057777343.1`
3	Cytosol	细胞质基质	0.60000	`XP_057777352.1`
4	Nucleus	细胞核	0.00000	`XP_057777343.1`
5	Chromosome	染色体	0.00000	`XP_057777343.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:56159914`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A18,C61

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057777343.1

490 aa

245

490

Ank_2

Ank_4

Ank_5

Ank_3

Ank

PK_Tyr_Ser-Thr

Pkinase

PF12796 Ank_2 81-169 aa PF13637 Ank_4 83-129 aa PF13857 Ank_5 95-145 aa PF13606 Ank_3 108-137 aa PF00023 Ank 108-140 aa PF07714 PK_Tyr_Ser-Thr 203-453 aa PF00069 Pkinase 207-451 aa

XP_057777352.1

476 aa

238

476

Ank_2

Ank_4

Ank_5

Ank_3

Ank

PK_Tyr_Ser-Thr

Pkinase

PF12796 Ank_2 81-169 aa PF13637 Ank_4 83-129 aa PF13857 Ank_5 95-145 aa PF13606 Ank_3 108-137 aa PF00023 Ank 108-140 aa PF07714 PK_Tyr_Ser-Thr 203-453 aa PF00069 Pkinase 207-451 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057777343.1`	Pfam	`PF12796`	Ank_2	Repeat	81	169	3.8e-14	53.7	Ankyrin repeats (3 copies)
`XP_057777343.1`	Pfam	`PF13637`	Ank_4	Repeat	83	129	1.3e-10	41.9	Ankyrin repeats (many copies)
`XP_057777343.1`	Pfam	`PF13857`	Ank_5	Repeat	95	145	1.1e-07	32.8	Ankyrin repeats (many copies)
`XP_057777343.1`	Pfam	`PF13606`	Ank_3	Repeat	108	137	5.3e-05	24.0	Ankyrin repeat
`XP_057777343.1`	Pfam	`PF00023`	Ank	Repeat	108	140	6.1e-15	55.2	Ankyrin repeat
`XP_057777343.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	203	453	2e-50	172.2	Protein tyrosine and serine/threonine kinase
`XP_057777343.1`	Pfam	`PF00069`	Pkinase	Domain	207	451	1.5e-47	162.9	Protein kinase domain
`XP_057777352.1`	Pfam	`PF12796`	Ank_2	Repeat	81	169	3.9e-14	53.7	Ankyrin repeats (3 copies)
`XP_057777352.1`	Pfam	`PF13637`	Ank_4	Repeat	83	129	6.4e-11	42.9	Ankyrin repeats (many copies)
`XP_057777352.1`	Pfam	`PF13857`	Ank_5	Repeat	95	145	9.9e-08	32.9	Ankyrin repeats (many copies)
`XP_057777352.1`	Pfam	`PF13606`	Ank_3	Repeat	108	137	5.7e-05	23.9	Ankyrin repeat
`XP_057777352.1`	Pfam	`PF00023`	Ank	Repeat	108	140	6.8e-15	55.1	Ankyrin repeat
`XP_057777352.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	203	453	1.9e-50	172.3	Protein tyrosine and serine/threonine kinase
`XP_057777352.1`	Pfam	`PF00069`	Pkinase	Domain	207	451	1.4e-47	163.0	Protein kinase domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057921360.1
GCAATGAAAGCGAGATGCGGAGGATCTCTCCCAATGAAATTGATTAAAAAATAGTGACGTCTTTATCGGCGATCGAGTGGAATAAAATACATGCACATTATGGTCTCTTCATTTCAGCTTTCTTCCCCTAATTTCTGATCCTCCCATCTGTCTGGTTACTCTCACTCAGATCCATTCCTTTTTCATTCCTTCATTCATTTCCATTTCGTTTGAGGGCTTTCTTCTCCAGCTCTCTAACGATCGACTCTCCAAAATTCCCA...

XM_057921369.1
CGAGATGCGGAGGATCTCTCCCAATGAAATTGATTAAAAAATAGTGACGTCTTTATCGGCGATCGAGTGGAATAAAATACATGCACATTATGGTCTCTTCATTTCAGCTTTCTTCCCCTAATTTCTGATCCTCCCATCTGTCTGGTTACTCTCACTCAGATCCATTCCTTTTTCATTCCTTCATTCATTTCCATTTCGTTTGAGGGCTTTCTTCTCCAGCTCTCTAACGATCGACTCTCCAAAATTCCCACCAAAATAGT...

CDS

2 records

下载 CDS FASTA

LOC130995876
ATGGATATTGCGTCGCAGTTGAAGCGCGGGATCTCGCGCCAGTTCTCGACCGGGTCGTTGAAGATGAGCCGGAGATTCAGTTTCCAGCGGCAGAACTCGCTGGACCCTCGGCGGAACAATTTCCGGTTCAGCTTCGGGCGGCAGTCGTCGATGGACCCCATACGGCGGACTCCAATGACGGACGACGGCGCCGACGAGGAGCTGACGGTGCCGAGCAACCTCGACAGCACAATGCAGCTGCTGTTCATGGCGTGCAAAGG...

Protein

2 records

下载 Protein FASTA

XP_057777343.1
MDIASQLKRGISRQFSTGSLKMSRRFSFQRQNSLDPRRNNFRFSFGRQSSMDPIRRTPMTDDGADEELTVPSNLDSTMQLLFMACKGDVAGVQDMLDEGVDVNSIDLDGRTALHIAACEGHVEVAKLLLSRKANIDARDRWGSTAAADAKYYGNVEVFNILKARGANVPKTKKTPMTVANPREVPEYELNPLDIQIRRGDGISKGSYQVAKWNGTKVSVKILDKDGHTDHHSINVFRHELTLLEKVRHPNVVQFIGAVTQ...

XP_057777352.1
MDIASQLKRGISRQFSTGSLKMSRRFSFQRQNSLDPRRNNFRFSFGRQSSMDPIRRTPMTDDGADEELTVPSNLDSTMQLLFMACKGDVAGVQDMLDEGVDVNSIDLDGRTALHIAACEGHVEVAKLLLSRKANIDARDRWGSTAAADAKYYGNVEVFNILKARGANVPKTKKTPMTVANPREVPEYELNPLDIQIRRGDGISKGSYQVAKWNGTKVSVKILDKDGHTDHHSINVFRHELTLLEKVRHPNVVQFIGAVTQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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