Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G003833`

染色体: Chr01 坐标: 56655992-56661823 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G003833`
名称	SmilChr01G003833
描述	histone-lysine N-methyltransferase ASHH1
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	56655992 - 56661823 / `+`

ID 对照

NCBI Gene ID	`LOC130995887`
GeneID	`130995887`
locus_tag	`-`
NCBI Name	`LOC130995887`
原始查询	`LOC130995887`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	histone-lysine N-methyltransferase ASHH1
产物	histone-lysine N-methyltransferase ASHH1
Arabidopsis	`AT1G76710` (ASHH1) SET domain group 26 [Source:NCBI gene (formerly Entrezgene);Acc:844005] identity=57.8; qcov=0.991; evalue=0; confidence=high
Rice	`Os04g0429100` (OsSET19) - identity=51.1; qcov=1.09; evalue=2.07e-171; confidence=high
GO	GO:0000785 (chromatin); GO:0005515 (protein binding); GO:0005634 (nucleus); GO:0006355 (regulation of DNA-templated transcription); GO:0046975 (histone H3K36 methyltransferase activity)
KEGG	-
Pfam	PF00856 (SET); PF17907 (AWS)
InterPro	-
eggNOG	-
NR	GeneID:130995887

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057777364.1`
2	Chromosome	染色体	0.80000	`XP_057777364.1`
3	Telomere	端粒	0.20000	`XP_057777364.1`
4	Centromere	着丝粒	0.00000	`XP_057777366.1`
5	Chromatin	染色质	0.00000	`XP_057777366.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:56661542`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr1:56661572`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B131,C85,D10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057777364.1

485 aa

242

485

AWS

SET

PF17907 AWS 55-91 aa PF00856 SET 105-211 aa

XP_057777366.1

478 aa

239

478

AWS

SET

PF17907 AWS 48-84 aa PF00856 SET 98-204 aa

XP_057777373.1

452 aa

226

452

AWS

SET

PF17907 AWS 22-58 aa PF00856 SET 72-178 aa

XP_057777382.1

452 aa

226

452

AWS

SET

PF17907 AWS 22-58 aa PF00856 SET 72-178 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057777364.1`	Pfam	`PF17907`	AWS	Domain	55	91	5.4e-11	43.0	AWS domain
`XP_057777364.1`	Pfam	`PF00856`	SET	Family	105	211	1.1e-26	94.1	SET domain
`XP_057777366.1`	Pfam	`PF17907`	AWS	Domain	48	84	5.3e-11	43.1	AWS domain
`XP_057777366.1`	Pfam	`PF00856`	SET	Family	98	204	1e-26	94.1	SET domain
`XP_057777373.1`	Pfam	`PF17907`	AWS	Domain	22	58	4.8e-11	43.2	AWS domain
`XP_057777373.1`	Pfam	`PF00856`	SET	Family	72	178	9.4e-27	94.3	SET domain
`XP_057777382.1`	Pfam	`PF17907`	AWS	Domain	22	58	4.8e-11	43.2	AWS domain
`XP_057777382.1`	Pfam	`PF00856`	SET	Family	72	178	9.4e-27	94.3	SET domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057921383.1
TTGCATCATGAAGTTATTTAGAAAAGGAGTTTCTATTTCTCGTCATGTTTGGATCAAATGCAAAGTGAAACACTGGAAAGCAAGAAGCAGAAGCTTAAGAAAATTTGAAGAAGATAGTTCCTTTCATTCTCCCTCCAATTTCTTTGACCTGACTGAATAGGAAATGTAAAATCTGAACATTTTTTCTTTTTTCCCCAATTGCTCGCACAATACGCACCTTTCATATCCATATTTCAATTCAGAGTGGGCGAGTGGGGAAG...

XM_057921399.1
TGCATCATGAAGTTATTTAGAAAAGGAGTTTCTATTTCTCGTCATGTTTGGATCAAATGCAAAGTGAAACACTGGAAAGCAAGAAGCAGAAGCTTAAGAAAATTTGAAGAAGATAGTTCCTTTCATTCTCCCTCCAATTTCTTTGACCTGACTGAATAGGAAATGTAAAATCTGAACATTTTTTCTTTTTTCCCCAATTGCTCGCACAATACGCACCTTTCATATCCATATTTCAATTCAGAGTGGGCGAGTGGGGAAGG...

CDS

4 records

下载 CDS FASTA

LOC130995887
ATGAACCCGAATCTTGAACTAGAGGGAGAGGGACTTCCGCCATTTGTGCATATTAGACAAAATGACTTTTGGGGTAGAAAGCACAAAAAATTGAAAGAAGAGGATATTGCTATTTGTGAGTGCAAGTATGATCCTTGTAATCCTGATAGTGCATGTGGGGAAAGCTGTCTGAATGCATTAACCAACACAGAGTGCACGCCAGGATATTGTCCTTGTGATCAGCACTGCAAGAATCAGAAATTTCAGAAATGTGAATATGC...

LOC130995887
ATGTATGTTACGAATGAATATGCAAAAACTGCAATTTACTTGTCTGCATCATGCTTCTATTACATATTGGATCACCTAGTAGCAGCTTCTATTGACAAACAGCACAAAAAATTGAAAGAAGAGGATATTGCTATTTGTGAGTGCAAGTATGATCCTTGTAATCCTGATAGTGCATGTGGGGAAAGCTGTCTGAATGCATTAACCAACACAGAGTGCACGCCAGGATATTGTCCTTGTGATCAGCACTGCAAGAATCAGAA...

Protein

4 records

下载 Protein FASTA

XP_057777364.1
MYVTNEYAKTAIYLSASCFYYILDHLVAASIDKQHKKLKEEDIAICECKYDPCNPDSACGESCLNALTNTECTPGYCPCDQHCKNQKFQKCEYAKTKLFKTEGRGWGLLADQNIKAGEFIIEYCGEVISSEVAKRRSHAYEAQGLKDAYIISLNSNYFIDATKKGSLARFINHSCEPNCETRKWTVLGETRVGIFAKVDISVGTELAYDYNFEWYGGVTVRCLCGAANCSLFLGAKSQGFQDYYHVWEDGDERYTVEDVP...

XP_057777366.1
MNPNLELEGEGLPPFVHIRQNDFWGRKHKKLKEEDIAICECKYDPCNPDSACGESCLNALTNTECTPGYCPCDQHCKNQKFQKCEYAKTKLFKTEGRGWGLLADQNIKAGEFIIEYCGEVISSEVAKRRSHAYEAQGLKDAYIISLNSNYFIDATKKGSLARFINHSCEPNCETRKWTVLGETRVGIFAKVDISVGTELAYDYNFEWYGGVTVRCLCGAANCSLFLGAKSQGFQDYYHVWEDGDERYTVEDVPLYDSAED...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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