Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G002904`

染色体: Chr07 坐标: 29461480-29466946 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G002904`
名称	SmilChr07G002904
描述	cell division control protein 48 homolog B
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	29461480 - 29466946 / `+`

ID 对照

NCBI Gene ID	`LOC130995902`
GeneID	`130995902`
locus_tag	`-`
NCBI Name	`LOC130995902`
原始查询	`LOC130995902`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	cell division control protein 48 homolog B
产物	cell division control protein 48 homolog B
Arabidopsis	`AT2G03670` (CDC48B) cell division cycle 48B [Source:NCBI gene (formerly Entrezgene);Acc:814895] identity=73.6; qcov=0.886; evalue=0; confidence=high
Rice	`Os04g0498800` - identity=66; qcov=0.893; evalue=0; confidence=high
GO	GO:0005524 (ATP binding); GO:0016887 (ATP hydrolysis activity)
KEGG	-
Pfam	PF00004 (AAA); PF17862 (AAA_lid_3)
InterPro	-
eggNOG	-
NR	GeneID:130995902

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Peroxisome	过氧化物酶体	0.80000	`XP_057777370.1`
2	Chloroplast	叶绿体	0.60000	`XP_057777370.1`
3	Mitochondrion	线粒体	0.20000	`XP_057777370.1`
4	Peroxisome membrane	过氧化物酶体膜	0.20000	`XP_057777370.1`
5	Nucleus	细胞核	0.00000	`XP_057777370.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:29463298`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr7:29463566`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A20,C54
`Chr7:29464047`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B78
`Chr7:29464679`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B104,B72,B88,C65,C71
`Chr7:29464842`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B70
`Chr7:29466237`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr7:29466400`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C43
`Chr7:29466466`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A18
`Chr7:29466563`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C78
`Chr7:29466574`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B104,B72,B88,C65,C71
`Chr7:29466613`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B72,B88
`Chr7:29466651`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A11,B101,B48,B66,D5

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057777370.1

606 aa

303

606

AAA

AAA_lid_3

AAA

AAA_lid_3

PF00004 AAA 54-190 aa PF17862 AAA_lid_3 214-249 aa PF00004 AAA 325-457 aa PF17862 AAA_lid_3 480-525 aa

XP_057777371.1

606 aa

303

606

AAA

AAA_lid_3

AAA

AAA_lid_3

PF00004 AAA 54-190 aa PF17862 AAA_lid_3 214-249 aa PF00004 AAA 325-457 aa PF17862 AAA_lid_3 480-525 aa

XP_057777372.1

606 aa

303

606

AAA

AAA_lid_3

AAA

AAA_lid_3

PF00004 AAA 54-190 aa PF17862 AAA_lid_3 214-249 aa PF00004 AAA 325-457 aa PF17862 AAA_lid_3 480-525 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057777370.1`	Pfam	`PF00004`	AAA	Domain	54	190	3.6e-76	254.6	ATPase family associated with various cellular activities (AAA)
`XP_057777370.1`	Pfam	`PF17862`	AAA_lid_3	Domain	214	249	8.9e-29	99.4	AAA+ lid domain
`XP_057777370.1`	Pfam	`PF00004`	AAA	Domain	325	457	3.6e-76	254.6	ATPase family associated with various cellular activities (AAA)
`XP_057777370.1`	Pfam	`PF17862`	AAA_lid_3	Domain	480	525	8.9e-29	99.4	AAA+ lid domain
`XP_057777371.1`	Pfam	`PF00004`	AAA	Domain	54	190	3.6e-76	254.6	ATPase family associated with various cellular activities (AAA)
`XP_057777371.1`	Pfam	`PF17862`	AAA_lid_3	Domain	214	249	8.9e-29	99.4	AAA+ lid domain
`XP_057777371.1`	Pfam	`PF00004`	AAA	Domain	325	457	3.6e-76	254.6	ATPase family associated with various cellular activities (AAA)
`XP_057777371.1`	Pfam	`PF17862`	AAA_lid_3	Domain	480	525	8.9e-29	99.4	AAA+ lid domain
`XP_057777372.1`	Pfam	`PF00004`	AAA	Domain	54	190	3.6e-76	254.6	ATPase family associated with various cellular activities (AAA)
`XP_057777372.1`	Pfam	`PF17862`	AAA_lid_3	Domain	214	249	8.9e-29	99.4	AAA+ lid domain
`XP_057777372.1`	Pfam	`PF00004`	AAA	Domain	325	457	3.6e-76	254.6	ATPase family associated with various cellular activities (AAA)
`XP_057777372.1`	Pfam	`PF17862`	AAA_lid_3	Domain	480	525	8.9e-29	99.4	AAA+ lid domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057921389.1
AAACTATGTTCAATTAAATCAAGGCCCCAATACAGAGCCCAATTCCCTTCCTCCTTTTATACAACACGCGACTAAAACTCTCTCTGATCACATCTCTCAAACTCAAGCACCCTCCCTCTGGAAACTGCCGCCGCCGCCTCCGCCTCCGCCTCCTCCGGCCAACGACGCCTCTCGCCCCCTCTTAAACTTTCTCCTTCCCTCTCTTACTCTCTTCTCACAGAACACGCGCACACACGAACAACCTACGCCGCCGCCCAGAC...

XM_057921387.1
TACAGAGCCCAATTCCCTTCCTCCTTTTATACAACACGCGACTAAAACTCTCTCTGATCACATCTCTCAAACTCAAGCACCCTCCCTCTGGAAACTGCCGCCGCCGCCTCCGCCTCCGCCTCCTCCGGCCAACGACGCCTCTCGCCCCCTCTTAAACTTTCTCCTTCCCTCTCTTACTCTCTTCTCACAGAACACGCGCACACACGAACAACCTACGCCGCCGCCCAGACTCCGGCGACTTCGCCGACCGCCACTGCCGC...

CDS

3 records

下载 CDS FASTA

LOC130995902
ATGGCCATTTCAAGCAAAAGCAGCGCCACCGCTGCATGGAGGGCGGAGGAGGCTATCGCTGGAAATTTTGAAGCTTTACAAGCGCTGAGGGAGCTCATCTCATACCCTATACTCTACTCTCGCGAATCCAAATCACTCGGTTTAAAATGGCCTCGTGGTTTGCTGCTTTATGGACCGCCAGGCACGGGGAAGACAAGCTTGGTTCGAGCCGTCGTTCGCGAATGTGATGCGCATTTGAGCATCATTAGCCCACATTCTGT...

Protein

3 records

下载 Protein FASTA

XP_057777370.1
MAISSKSSATAAWRAEEAIAGNFEALQALRELISYPILYSRESKSLGLKWPRGLLLYGPPGTGKTSLVRAVVRECDAHLSIISPHSVHKSHAGESEKILREAFDEAAYHATSGKPSVIFIDEIDALCPRRDSRREQDIRIATQLSLLMDKNKSFLTSGSHVLVVASTNRVDSIEPALRRSGRFDAEIEVSTPNENERIQILKLYTKKLPLAPTVNLEGIAASCNGYVGADLEALCREAAMSALKRSSNVEQDANKCSITV...

XP_057777371.1
MAISSKSSATAAWRAEEAIAGNFEALQALRELISYPILYSRESKSLGLKWPRGLLLYGPPGTGKTSLVRAVVRECDAHLSIISPHSVHKSHAGESEKILREAFDEAAYHATSGKPSVIFIDEIDALCPRRDSRREQDIRIATQLSLLMDKNKSFLTSGSHVLVVASTNRVDSIEPALRRSGRFDAEIEVSTPNENERIQILKLYTKKLPLAPTVNLEGIAASCNGYVGADLEALCREAAMSALKRSSNVEQDANKCSITV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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