Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G002907`

染色体: Chr07 坐标: 29475690-29479298 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G002907`
名称	SmilChr07G002907
描述	UDP-glucuronic acid decarboxylase 6
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	29475690 - 29479298 / `-`

ID 对照

NCBI Gene ID	`LOC130995905`
GeneID	`130995905`
locus_tag	`-`
NCBI Name	`LOC130995905`
原始查询	`LOC130995905`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	UDP-glucuronic acid decarboxylase 6
产物	UDP-glucuronic acid decarboxylase 6
Arabidopsis	`AT2G28760` (UXS6) UDP-XYL synthase 6 [Source:NCBI gene (formerly Entrezgene);Acc:817426] identity=86.4; qcov=0.997; evalue=0; confidence=high
Rice	`Os03g0278000` (UXS) - identity=83.5; qcov=0.997; evalue=0; confidence=high
GO	GO:0005737 (cytoplasm); GO:0042732 (D-xylose metabolic process); GO:0048040 (UDP-glucuronate decarboxylase activity); GO:0070403 (NAD+ binding)
KEGG	smil00520 (Amino sugar and nucleotide sugar metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01250 (Biosynthesis of nucleotide sugars - Salvia miltiorrhiza (redroot sage))
Pfam	PF01073 (3Beta_HSD); PF01370 (Epimerase); PF02719 (Polysacc_synt_2); PF04321 (RmlD_sub_bind); PF07993 (NAD_binding_4); PF16363 (GDP_Man_Dehyd)
InterPro	-
eggNOG	-
NR	GeneID:130995905

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057777376.1`
2	Cytosol	细胞质基质	1.00000	`XP_057777376.1`
3	Nucleus	细胞核	0.20000	`XP_057777376.1`
4	Chromosome	染色体	0.00000	`XP_057777376.1`
5	Centromere	着丝粒	0.00000	`XP_057777376.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:29475937`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr7:29475960`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr7:29476920`	`C`	`CTA`	2bp_insertion	frameshift_variant	19	A7,B13,B22,B23,B27,B40,B45,B65,B74,B77,B99,C14,C15,C20,C44,C47,C72,C79,C9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057777376.1

346 aa

173

346

RmlD_sub_bind

Polysacc_synt_2

Epimerase

3Beta_HSD

GDP_Man_Dehyd

NAD_binding_4

PF04321 RmlD_sub_bind 33-294 aa PF02719 Polysacc_synt_2 35-142 aa PF01370 Epimerase 35-269 aa PF01073 3Beta_HSD 36-187 aa PF16363 GDP_Man_Dehyd 36-331 aa PF07993 NAD_binding_4 91-228 aa

XP_057777377.1

346 aa

173

346

RmlD_sub_bind

Polysacc_synt_2

Epimerase

3Beta_HSD

GDP_Man_Dehyd

NAD_binding_4

PF04321 RmlD_sub_bind 33-294 aa PF02719 Polysacc_synt_2 35-142 aa PF01370 Epimerase 35-269 aa PF01073 3Beta_HSD 36-187 aa PF16363 GDP_Man_Dehyd 36-331 aa PF07993 NAD_binding_4 91-228 aa

XP_057777378.1

346 aa

173

346

RmlD_sub_bind

Polysacc_synt_2

Epimerase

3Beta_HSD

GDP_Man_Dehyd

NAD_binding_4

PF04321 RmlD_sub_bind 33-294 aa PF02719 Polysacc_synt_2 35-142 aa PF01370 Epimerase 35-269 aa PF01073 3Beta_HSD 36-187 aa PF16363 GDP_Man_Dehyd 36-331 aa PF07993 NAD_binding_4 91-228 aa

XP_057777379.1

346 aa

173

346

RmlD_sub_bind

Polysacc_synt_2

Epimerase

3Beta_HSD

GDP_Man_Dehyd

NAD_binding_4

PF04321 RmlD_sub_bind 33-294 aa PF02719 Polysacc_synt_2 35-142 aa PF01370 Epimerase 35-269 aa PF01073 3Beta_HSD 36-187 aa PF16363 GDP_Man_Dehyd 36-331 aa PF07993 NAD_binding_4 91-228 aa

XP_057777380.1

346 aa

173

346

RmlD_sub_bind

Polysacc_synt_2

Epimerase

3Beta_HSD

GDP_Man_Dehyd

NAD_binding_4

PF04321 RmlD_sub_bind 33-294 aa PF02719 Polysacc_synt_2 35-142 aa PF01370 Epimerase 35-269 aa PF01073 3Beta_HSD 36-187 aa PF16363 GDP_Man_Dehyd 36-331 aa PF07993 NAD_binding_4 91-228 aa

XP_057777381.1

346 aa

173

346

RmlD_sub_bind

Polysacc_synt_2

Epimerase

3Beta_HSD

GDP_Man_Dehyd

NAD_binding_4

PF04321 RmlD_sub_bind 33-294 aa PF02719 Polysacc_synt_2 35-142 aa PF01370 Epimerase 35-269 aa PF01073 3Beta_HSD 36-187 aa PF16363 GDP_Man_Dehyd 36-331 aa PF07993 NAD_binding_4 91-228 aa

XP_057777383.1

346 aa

173

346

RmlD_sub_bind

Polysacc_synt_2

Epimerase

3Beta_HSD

GDP_Man_Dehyd

NAD_binding_4

PF04321 RmlD_sub_bind 33-294 aa PF02719 Polysacc_synt_2 35-142 aa PF01370 Epimerase 35-269 aa PF01073 3Beta_HSD 36-187 aa PF16363 GDP_Man_Dehyd 36-331 aa PF07993 NAD_binding_4 91-228 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057777376.1`	Pfam	`PF04321`	RmlD_sub_bind	Domain	33	294	1.7e-07	31.3	RmlD substrate binding domain
`XP_057777376.1`	Pfam	`PF02719`	Polysacc_synt_2	Family	35	142	3.1e-12	47.0	Polysaccharide biosynthesis protein
`XP_057777376.1`	Pfam	`PF01370`	Epimerase	Family	35	269	1.6e-45	156.1	NAD dependent epimerase/dehydratase family
`XP_057777376.1`	Pfam	`PF01073`	3Beta_HSD	Family	36	187	2.2e-12	47.3	3-beta hydroxysteroid dehydrogenase/isomerase family
`XP_057777376.1`	Pfam	`PF16363`	GDP_Man_Dehyd	Domain	36	331	5e-49	168.3	GDP-mannose 4,6 dehydratase
`XP_057777376.1`	Pfam	`PF07993`	NAD_binding_4	Family	91	228	9.9e-13	48.5	Male sterility protein
`XP_057777377.1`	Pfam	`PF04321`	RmlD_sub_bind	Domain	33	294	1.7e-07	31.3	RmlD substrate binding domain
`XP_057777377.1`	Pfam	`PF02719`	Polysacc_synt_2	Family	35	142	3.1e-12	47.0	Polysaccharide biosynthesis protein
`XP_057777377.1`	Pfam	`PF01370`	Epimerase	Family	35	269	1.6e-45	156.1	NAD dependent epimerase/dehydratase family
`XP_057777377.1`	Pfam	`PF01073`	3Beta_HSD	Family	36	187	2.2e-12	47.3	3-beta hydroxysteroid dehydrogenase/isomerase family
`XP_057777377.1`	Pfam	`PF16363`	GDP_Man_Dehyd	Domain	36	331	5e-49	168.3	GDP-mannose 4,6 dehydratase
`XP_057777377.1`	Pfam	`PF07993`	NAD_binding_4	Family	91	228	9.9e-13	48.5	Male sterility protein
`XP_057777378.1`	Pfam	`PF04321`	RmlD_sub_bind	Domain	33	294	1.7e-07	31.3	RmlD substrate binding domain
`XP_057777378.1`	Pfam	`PF02719`	Polysacc_synt_2	Family	35	142	3.1e-12	47.0	Polysaccharide biosynthesis protein
`XP_057777378.1`	Pfam	`PF01370`	Epimerase	Family	35	269	1.6e-45	156.1	NAD dependent epimerase/dehydratase family
`XP_057777378.1`	Pfam	`PF01073`	3Beta_HSD	Family	36	187	2.2e-12	47.3	3-beta hydroxysteroid dehydrogenase/isomerase family
`XP_057777378.1`	Pfam	`PF16363`	GDP_Man_Dehyd	Domain	36	331	5e-49	168.3	GDP-mannose 4,6 dehydratase
`XP_057777378.1`	Pfam	`PF07993`	NAD_binding_4	Family	91	228	9.9e-13	48.5	Male sterility protein
`XP_057777379.1`	Pfam	`PF04321`	RmlD_sub_bind	Domain	33	294	1.7e-07	31.3	RmlD substrate binding domain
`XP_057777379.1`	Pfam	`PF02719`	Polysacc_synt_2	Family	35	142	3.1e-12	47.0	Polysaccharide biosynthesis protein
`XP_057777379.1`	Pfam	`PF01370`	Epimerase	Family	35	269	1.6e-45	156.1	NAD dependent epimerase/dehydratase family
`XP_057777379.1`	Pfam	`PF01073`	3Beta_HSD	Family	36	187	2.2e-12	47.3	3-beta hydroxysteroid dehydrogenase/isomerase family
`XP_057777379.1`	Pfam	`PF16363`	GDP_Man_Dehyd	Domain	36	331	5e-49	168.3	GDP-mannose 4,6 dehydratase
`XP_057777379.1`	Pfam	`PF07993`	NAD_binding_4	Family	91	228	9.9e-13	48.5	Male sterility protein
`XP_057777380.1`	Pfam	`PF04321`	RmlD_sub_bind	Domain	33	294	1.7e-07	31.3	RmlD substrate binding domain
`XP_057777380.1`	Pfam	`PF02719`	Polysacc_synt_2	Family	35	142	3.1e-12	47.0	Polysaccharide biosynthesis protein
`XP_057777380.1`	Pfam	`PF01370`	Epimerase	Family	35	269	1.6e-45	156.1	NAD dependent epimerase/dehydratase family
`XP_057777380.1`	Pfam	`PF01073`	3Beta_HSD	Family	36	187	2.2e-12	47.3	3-beta hydroxysteroid dehydrogenase/isomerase family
`XP_057777380.1`	Pfam	`PF16363`	GDP_Man_Dehyd	Domain	36	331	5e-49	168.3	GDP-mannose 4,6 dehydratase
`XP_057777380.1`	Pfam	`PF07993`	NAD_binding_4	Family	91	228	9.9e-13	48.5	Male sterility protein
`XP_057777381.1`	Pfam	`PF04321`	RmlD_sub_bind	Domain	33	294	1.7e-07	31.3	RmlD substrate binding domain
`XP_057777381.1`	Pfam	`PF02719`	Polysacc_synt_2	Family	35	142	3.1e-12	47.0	Polysaccharide biosynthesis protein
`XP_057777381.1`	Pfam	`PF01370`	Epimerase	Family	35	269	1.6e-45	156.1	NAD dependent epimerase/dehydratase family
`XP_057777381.1`	Pfam	`PF01073`	3Beta_HSD	Family	36	187	2.2e-12	47.3	3-beta hydroxysteroid dehydrogenase/isomerase family
`XP_057777381.1`	Pfam	`PF16363`	GDP_Man_Dehyd	Domain	36	331	5e-49	168.3	GDP-mannose 4,6 dehydratase
`XP_057777381.1`	Pfam	`PF07993`	NAD_binding_4	Family	91	228	9.9e-13	48.5	Male sterility protein
`XP_057777383.1`	Pfam	`PF04321`	RmlD_sub_bind	Domain	33	294	1.7e-07	31.3	RmlD substrate binding domain
`XP_057777383.1`	Pfam	`PF02719`	Polysacc_synt_2	Family	35	142	3.1e-12	47.0	Polysaccharide biosynthesis protein
`XP_057777383.1`	Pfam	`PF01370`	Epimerase	Family	35	269	1.6e-45	156.1	NAD dependent epimerase/dehydratase family
`XP_057777383.1`	Pfam	`PF01073`	3Beta_HSD	Family	36	187	2.2e-12	47.3	3-beta hydroxysteroid dehydrogenase/isomerase family
`XP_057777383.1`	Pfam	`PF16363`	GDP_Man_Dehyd	Domain	36	331	5e-49	168.3	GDP-mannose 4,6 dehydratase
`XP_057777383.1`	Pfam	`PF07993`	NAD_binding_4	Family	91	228	9.9e-13	48.5	Male sterility protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

7 records

下载 cDNA FASTA

XM_057921396.1
CAAGAAGTCAACTATGCCAAGAGCCCACATAACTCGGCTCGACCGATAACAATTTTTAAGTTGCGTTTCCATGTCTGCCTCTGCAGGTTGTGTTATGGAGTAGAGTGATCTTGAAGATTTGGGCTTGGAATTGGAAGCTGAAGAAGGCGCCTCATAATGGCTAATCAAGCATCGAACGGAGGCAACCATGTGACCACCAAGCCACCTCCCGAGCCTTCGCCTCTGAGAAAAGCCAAATTCTTCCAGGCAAACATGAGAAT...

XM_057921398.1
ACATAACTCGGCTCGACCGATAACAATTTTTGTAAGTGTGGATTATCAAGAATATTAAAATTTTTGAAGCAGATCAAATATTTGGTTTAAAAGGAAAAAAAGGACAACCAAATCAGATTTTTTTGTCTATACGTATATGGTTATTGTTTATTTTTATTACTAATTTCGGTGAAAAGTTATTGTAGAAGTTGCGTTTCCATGTCTGCCTCTGCAGGTTGTGTTATGGAGTAGAGTGATCTTGAAGATTTGGGCTTGGAATT...

CDS

7 records

下载 CDS FASTA

LOC130995905
ATGGCTAATCAAGCATCGAACGGAGGCAACCATGTGACCACCAAGCCACCTCCCGAGCCTTCGCCTCTGAGAAAAGCCAAATTCTTCCAGGCAAACATGAGAATTTTGGTAACTGGTGGAGCTGGATTCATCGGTTCTCACTTGGTCGATAAGCTGATGCAGAATGAGAAAAACGAAGTGATTGTTGTGGACAACTACTTCACTGGATCAAAGGACAACCTAAAGCAATGGATTGGCCATCCACGATTTGAGCTTATTCG...

Protein

7 records

下载 Protein FASTA

XP_057777376.1
MANQASNGGNHVTTKPPPEPSPLRKAKFFQANMRILVTGGAGFIGSHLVDKLMQNEKNEVIVVDNYFTGSKDNLKQWIGHPRFELIRHDVTEPLLVEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQTEDYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFLAQAIRDEALTVQLPGTQTRSFCYVSDMVDGLIRLMEG...

XP_057777377.1
MANQASNGGNHVTTKPPPEPSPLRKAKFFQANMRILVTGGAGFIGSHLVDKLMQNEKNEVIVVDNYFTGSKDNLKQWIGHPRFELIRHDVTEPLLVEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQTEDYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFLAQAIRDEALTVQLPGTQTRSFCYVSDMVDGLIRLMEG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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