Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G002912`

染色体: Chr07 坐标: 29520703-29522625 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G002912`
名称	SmilChr07G002912
描述	uncharacterized SmilChr07G002912
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	29520703 - 29522625 / `+`

ID 对照

NCBI Gene ID	`LOC130995906`
GeneID	`130995906`
locus_tag	`-`
NCBI Name	`LOC130995906`
原始查询	`LOC130995906`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Uncharacterized protein family UPF0090 [Source:NCBI gene (formerly Entrezgene);Acc:843252]; symbol=AT1G69210; hit=AT1G69210; species=arabidopsis; confidence=high
产物	Uncharacterized protein family UPF0090 [Source:NCBI gene (formerly Entrezgene);Acc:843252]; symbol=AT1G69210; hit=AT1G69210; species=arabidopsis; confidence=high
Arabidopsis	`AT1G69210` (AT1G69210) Uncharacterized protein family UPF0090 [Source:NCBI gene (formerly Entrezgene);Acc:843252] identity=62; qcov=0.657; evalue=1.46e-77; confidence=high
Rice	`Os07g0155200` - identity=55; qcov=0.675; evalue=4.76e-68; confidence=high
GO	GO:0042274 (ribosomal small subunit biogenesis)
KEGG	-
Pfam	PF02576 (RimP_N); PF25498 (DUF7912)
InterPro	-
eggNOG	-
NR	GeneID:130995906

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057777384.1`
2	Chloroplast	叶绿体	1.00000	`XP_057777384.1`
3	Nucleus	细胞核	0.00000	`XP_057777384.1`
4	Chromosome	染色体	0.00000	`XP_057777384.1`
5	Centromere	着丝粒	0.00000	`XP_057777384.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:29522352`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057777384.1

282 aa

141

282

RimP_N

DUF7912

PF02576 RimP_N 132-189 aa PF25498 DUF7912 191-279 aa

XP_057777385.1

280 aa

140

280

RimP_N

DUF7912

PF02576 RimP_N 130-187 aa PF25498 DUF7912 189-277 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057777384.1`	Pfam	`PF02576`	RimP_N	Domain	132	189	2.9e-05	25.1	RimP N-terminal domain
`XP_057777384.1`	Pfam	`PF25498`	DUF7912	Domain	191	279	7.5e-38	129.2	Domain of unknown function (DUF7912)
`XP_057777385.1`	Pfam	`PF02576`	RimP_N	Domain	130	187	2.4e-05	25.3	RimP N-terminal domain
`XP_057777385.1`	Pfam	`PF25498`	DUF7912	Domain	189	277	7.5e-38	129.2	Domain of unknown function (DUF7912)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057921401.1
TGAATTATGTTGTATCGACCAAAGCCCGTTTTGAGCACCCACAATTTATAGTATGAATTCTGATATAATCCATATTTGATGTCTAATATATAATCCAGCCTCGACCCAACTCTAGCTTTGGTTTGGAGGTGGTGGAAATTGCAAGAATCTACGCATTTGCATTGGAAAATATGAGGCTTTACAGAGGTGTAAGGAGAATCTGCTCGTCTTCTACTCTCTTTTCTCGCATTCATCCTTCATCTAAACCGGGACTTTATAAA...

XM_057921402.1
GTATCGACCAAAGCCCGTTTTGAGCACCCACAATTTATAGTATGAATTCTGATATAATCCATATTTGATGTCTAATATATAATCCAGCCTCGACCCAACTCTAGCTTTGGTTTGGAGGTGGTGGAAATTGCAAGAATCTACGCATTTGCATTGGAAAATATGAGGCTTTACAGAGGTGTAAGGAGAATCTGCTCGTCTTCTACTCTCTTTTCTCGCATTCATCCTTCATCTAAACCGGGACTTTATAAAGCTTCCTGCAT...

CDS

2 records

下载 CDS FASTA

LOC130995906
ATGAGGCTTTACAGAGGTGTAAGGAGAATCTGCTCGTCTTCTACTCTCTTTTCTCGCATTCATCCTTCATCTAAACCGGGACTTTATAAAGCTTCCTGCATTTCTCCCAAACCCGCATCCTATTTTGCTTCTATCACCGCTTCTCGCCACTTCCACGCTACTTCTTCTGTTTATAACCACCACCGCCTTCATGTTGATGTTGATGCTTCAGATGATTCTAATGGTGAAGTAGAACCAATTGATTCGTGGGAGGAGGAGGA...

LOC130995906
ATGAGGCTTTACAGAGGTGTAAGGAGAATCTGCTCGTCTTCTACTCTCTTTTCTCGCATTCATCCTTCATCTAAACCGGGACTTTATAAAGCTTCCTGCATTTCTCCCAAACCCGCATCCTATTTTGCTTCTATCACCGCTTCTCGCCACTTCCACGCTACTTCTTCTGTTTATAACCACCACCGCCTTCATGTTGATGTTGATGATGATTCTAATGGTGAAGTAGAACCAATTGATTCGTGGGAGGAGGAGGATGAAGC...

Protein

2 records

下载 Protein FASTA

XP_057777384.1
MRLYRGVRRICSSSTLFSRIHPSSKPGLYKASCISPKPASYFASITASRHFHATSSVYNHHRLHVDVDASDDSNGEVEPIDSWEEEDEAEPEIGDGGDGGGVVLNNCPWGERALSIAREVLLEFGEEMQLYAFKTSPRGYIYVRLDKLSNEYGCPGMDEIESFSRQYKKSLDEEIPDDLALEVSSPGADRLLRVPDDLLRFKDMAMIVTYFQDSDAGSPEKEAVYLLDSIETESQCCVWKLADVRENRDPAAKGRPLSRK...

XP_057777385.1
MRLYRGVRRICSSSTLFSRIHPSSKPGLYKASCISPKPASYFASITASRHFHATSSVYNHHRLHVDVDDDSNGEVEPIDSWEEEDEAEPEIGDGGDGGGVVLNNCPWGERALSIAREVLLEFGEEMQLYAFKTSPRGYIYVRLDKLSNEYGCPGMDEIESFSRQYKKSLDEEIPDDLALEVSSPGADRLLRVPDDLLRFKDMAMIVTYFQDSDAGSPEKEAVYLLDSIETESQCCVWKLADVRENRDPAAKGRPLSRKQR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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