Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G003848`

染色体: Chr01 坐标: 56780260-56786586 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G003848`
名称	SmilChr01G003848
描述	uncharacterized SmilChr01G003848
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	56780260 - 56786586 / `-`

ID 对照

NCBI Gene ID	`LOC130995911`
GeneID	`130995911`
locus_tag	`-`
NCBI Name	`LOC130995911`
原始查询	`LOC130995911`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Ypt/Rab-GAP domain of gyp1p superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:817622]; symbol=AT2G30710; hit=AT2G30710; species=arabidopsis; confidence=high
产物	Ypt/Rab-GAP domain of gyp1p superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:817622]; symbol=AT2G30710; hit=AT2G30710; species=arabidopsis; confidence=high
Arabidopsis	`AT2G30710` (AT2G30710) Ypt/Rab-GAP domain of gyp1p superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:817622] identity=73; qcov=0.945; evalue=0; confidence=high
Rice	`Os09g0515800` (TBC22A) - identity=73.6; qcov=0.956; evalue=0; confidence=high
GO	GO:0005096 (GTPase activator activity); GO:0090630 (activation of GTPase activity)
KEGG	-
Pfam	PF00566 (RabGAP-TBC); PF23436 (RabGap-TBC_2)
InterPro	-
eggNOG	-
NR	GeneID:130995911

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057777394.1`
2	Golgi apparatus	高尔基体	0.60000	`XP_057777394.1`
3	Trans-golgi network	Trans-golgi network	0.40000	`XP_057777394.1`
4	Cytoplasmic vesicle	细胞质囊泡	0.20000	`XP_057777394.1`
5	Vesicle	囊泡	0.20000	`XP_057777394.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:56780461`	`TGA`	`T`	2bp_deletion	frameshift_variant	6	B10,B53,B6,B79,C26,D3
`Chr1:56780527`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B12,B4,C36,C53
`Chr1:56780540`	`T`	`TC`	1bp_insertion	frameshift_variant	1	C32
`Chr1:56780540`	`T`	`TC`	1bp_insertion	CDS_variant	1	C32
`Chr1:56780543`	`GC`	`G`	1bp_deletion	frameshift_variant	1	C32
`Chr1:56780543`	`GC`	`G`	1bp_deletion	CDS_variant	1	C32
`Chr1:56780832`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A4,C46,D7
`Chr1:56780879`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C36,C53
`Chr1:56782491`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D8
`Chr1:56782618`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B37
`Chr1:56782665`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B101,B108,B117,B121,B44

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057777394.1

455 aa

228

455

RabGAP-TBC

RabGap-TBC_2

PF00566 RabGAP-TBC 163-406 aa PF23436 RabGap-TBC_2 300-421 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057777394.1`	Pfam	`PF00566`	RabGAP-TBC	Family	163	406	2.7e-48	165.2	Rab-GTPase-TBC domain
`XP_057777394.1`	Pfam	`PF23436`	RabGap-TBC_2	Domain	300	421	5.9e-09	36.6	RabGAP TBC domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057921411.1
CAGTCTTTAAAACAAAACAGCACAAGTAAAAAGAAAAAGAAAAGAATTCAGAAAATACTAATGAGTCATCACAGCTCCAATCCACGCCGATCAAACAGCGTAGTAGCAGCGCTAAATCGCAAGATTGATTTTTTCTCAAACAGCAACAAATTTGTGATGATTTTAGCGGAAATCTAGAAGACCAAAAAACCATGAGGAACAGCAGCAGCAACAGTAGAGATGACGACAGAAACAAAGAAGTTTCTTCTTCACCTCCAGTT...

CDS

1 records

下载 CDS FASTA

LOC130995911
ATGAGGAACAGCAGCAGCAACAGTAGAGATGACGACAGAAACAAAGAAGTTTCTTCTTCACCTCCAGTTACTGATTCCAGATTCAATCAAACTCTTAGAAATGTTCAAGGCTTGCTCAAGGGTCGCAGCTTCCCTGGTAAGATATTGATAACTCGGAGATCAGACCCTTTGGACCCATCAACTCTGCATTCCCCAAACATTGACAGGAGGTCTCCAGAGAGTGATAGAGATCATAGTGACCAACTGGACAGATCGACTGA...

Protein

1 records

下载 Protein FASTA

XP_057777394.1
MRNSSSNSRDDDRNKEVSSSPPVTDSRFNQTLRNVQGLLKGRSFPGKILITRRSDPLDPSTLHSPNIDRRSPESDRDHSDQLDRSTEDELQNRSSTNASSSVNNTKSSSTSSQSTSKEIPKSNVGARATDSARLMKFTKELSGSSVILEKLRELAWSGVPPYLRPTVWRLLLGYAPSNSDRREGVLRRKRVEYLDHVAQYYDIPDTQRTDEEITMLRQIAVDCPRTVPDLSFFQQAEVQKSLERILYTWAIRHPASGYVQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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