当前解析结果
SmilChr07G002923| 统一新 Gene ID | SmilChr07G002923 |
|---|---|
| 名称 | SmilChr07G002923 |
| 描述 | probable RNA-dependent RNA polymerase 1 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 29615975 - 29621030 / + |
| NCBI Gene ID | LOC130995917 |
|---|---|
| GeneID | 130995917 |
| locus_tag | - |
| NCBI Name | LOC130995917 |
| 原始查询 | LOC130995917 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable RNA-dependent RNA polymerase 1 |
| 产物 | probable RNA-dependent RNA polymerase 1 |
| Arabidopsis | AT1G14790 (RDR1)RNA-dependent RNA polymerase 1 [Source:NCBI gene (formerly Entrezgene);Acc:838044] identity=57.4; qcov=0.937; evalue=0; confidence=high |
| Rice | Os02g0736200 (RDR1)- identity=63.9; qcov=0.628; evalue=0; confidence=high |
| GO | GO:0003968 (RNA-directed RNA polymerase activity); GO:0030422 (siRNA processing); GO:0031380 (nuclear RNA-directed RNA polymerase complex) |
| KEGG | - |
| Pfam | PF05183 (RdRP); PF24577 (RDR6_2nd); PF24823 (PH_RDR2); PF26250 (RRM_RdRP1_2); PF26252 (RdRP_helical); PF26253 (RdRP_head) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130995917 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057777395.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057777395.1 |
| 3 | Cytosol | 细胞质基质 | 0.40000 | XP_057777395.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057777395.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057777395.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:29616768 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr7:29617625 |
ACT |
A |
2bp_deletion | frameshift_variant | 2 | C14,C37 |
Chr7:29617625 |
ACT |
A |
2bp_deletion | CDS_variant | 2 | C14,C37 |
Chr7:29617797 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A21,B101 |
Chr7:29618005 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B43 |
Chr7:29618486 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B72,C71 |
Chr7:29619255 |
GA |
G |
1bp_deletion | frameshift_variant | 13 | A16,B134,B18,B31,B44,B49,B6,B87,C12,C4,C44,C62,C8 |
Chr7:29619273 |
AT |
A |
1bp_deletion | frameshift_variant | 15 | A16,B134,B18,B19,B20,B31,B44,B49,B6,B87,C12,C4,C44,C62,C8 |
Chr7:29619276 |
CA |
C |
1bp_deletion | frameshift_variant | 13 | B134,B18,B19,B20,B31,B44,B49,B6,B87,C12,C4,C62,C8 |
Chr7:29619279 |
TAA |
T |
2bp_deletion | frameshift_variant | 13 | B134,B18,B19,B20,B31,B44,B49,B6,B87,C12,C4,C62,C8 |
Chr7:29619313 |
TA |
T |
1bp_deletion | frameshift_variant | 10 | A16,B134,B18,B20,B44,B49,B56,C12,C4,C8 |
Chr7:29619334 |
GC |
G |
1bp_deletion | frameshift_variant | 8 | A16,B134,B18,B44,B49,C12,C4,C8 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057777395.1PF26250
RRM_RdRP1_2 4-84 aa
PF24823
PH_RDR2 103-244 aa
PF24577
RDR6_2nd 144-223 aa
PF26252
RdRP_helical 265-338 aa
PF05183
RdRP 361-938 aa
PF26253
RdRP_head 958-1100 aa
XP_057777396.1PF26250
RRM_RdRP1_2 4-84 aa
PF24823
PH_RDR2 103-244 aa
PF24577
RDR6_2nd 144-223 aa
PF26252
RdRP_helical 265-338 aa
PF05183
RdRP 361-938 aa
PF26253
RdRP_head 958-1100 aa
XP_057777397.1PF26250
RRM_RdRP1_2 4-84 aa
PF24823
PH_RDR2 103-244 aa
PF24577
RDR6_2nd 144-223 aa
PF26252
RdRP_helical 265-338 aa
PF05183
RdRP 361-938 aa
PF26253
RdRP_head 958-1100 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057777395.1 |
Pfam | PF26250 |
RRM_RdRP1_2 | Domain | 4 | 84 | 5e-07 | 30.8 | RdRP1/2, RRM domain |
XP_057777395.1 |
Pfam | PF24823 |
PH_RDR2 | Domain | 103 | 244 | 1.6e-38 | 132.8 | RDR2 PH-like domain |
XP_057777395.1 |
Pfam | PF24577 |
RDR6_2nd | Domain | 144 | 223 | 1.4e-09 | 38.6 | RNA-dependent RNA polymerase 6 second domain |
XP_057777395.1 |
Pfam | PF26252 |
RdRP_helical | Domain | 265 | 338 | 1.8e-12 | 47.9 | RNA dependent RNA polymerase, helical domain |
XP_057777395.1 |
Pfam | PF05183 |
RdRP | Family | 361 | 938 | 2.1e-198 | 661.4 | RNA dependent RNA polymerase |
XP_057777395.1 |
Pfam | PF26253 |
RdRP_head | Domain | 958 | 1100 | 2.5e-44 | 151.7 | RdRP, head domain |
XP_057777396.1 |
Pfam | PF26250 |
RRM_RdRP1_2 | Domain | 4 | 84 | 5e-07 | 30.8 | RdRP1/2, RRM domain |
XP_057777396.1 |
Pfam | PF24823 |
PH_RDR2 | Domain | 103 | 244 | 1.6e-38 | 132.8 | RDR2 PH-like domain |
XP_057777396.1 |
Pfam | PF24577 |
RDR6_2nd | Domain | 144 | 223 | 1.4e-09 | 38.6 | RNA-dependent RNA polymerase 6 second domain |
XP_057777396.1 |
Pfam | PF26252 |
RdRP_helical | Domain | 265 | 338 | 1.8e-12 | 47.9 | RNA dependent RNA polymerase, helical domain |
XP_057777396.1 |
Pfam | PF05183 |
RdRP | Family | 361 | 938 | 2.1e-198 | 661.4 | RNA dependent RNA polymerase |
XP_057777396.1 |
Pfam | PF26253 |
RdRP_head | Domain | 958 | 1100 | 2.5e-44 | 151.7 | RdRP, head domain |
XP_057777397.1 |
Pfam | PF26250 |
RRM_RdRP1_2 | Domain | 4 | 84 | 5e-07 | 30.8 | RdRP1/2, RRM domain |
XP_057777397.1 |
Pfam | PF24823 |
PH_RDR2 | Domain | 103 | 244 | 1.6e-38 | 132.8 | RDR2 PH-like domain |
XP_057777397.1 |
Pfam | PF24577 |
RDR6_2nd | Domain | 144 | 223 | 1.4e-09 | 38.6 | RNA-dependent RNA polymerase 6 second domain |
XP_057777397.1 |
Pfam | PF26252 |
RdRP_helical | Domain | 265 | 338 | 1.8e-12 | 47.9 | RNA dependent RNA polymerase, helical domain |
XP_057777397.1 |
Pfam | PF05183 |
RdRP | Family | 361 | 938 | 2.1e-198 | 661.4 | RNA dependent RNA polymerase |
XP_057777397.1 |
Pfam | PF26253 |
RdRP_head | Domain | 958 | 1100 | 2.5e-44 | 151.7 | RdRP, head domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。