Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G003000`

染色体: Chr07 坐标: 30745366-30750686 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G003000`
名称	SmilChr07G003000
描述	heat shock protein 90-5, chloroplastic
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	30745366 - 30750686 / `-`

ID 对照

NCBI Gene ID	`LOC130995925`
GeneID	`130995925`
locus_tag	`-`
NCBI Name	`LOC130995925`
原始查询	`LOC130995925`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	heat shock protein 90-5, chloroplastic
产物	heat shock protein 90-5%2C chloroplastic
Arabidopsis	`AT2G04030` (CR88) Chaperone protein htpG family protein [Source:NCBI gene (formerly Entrezgene);Acc:814930] identity=80.2; qcov=1; evalue=0; confidence=high
Rice	`Os08g0487800` - identity=76.2; qcov=1; evalue=0; confidence=high
GO	GO:0005524 (ATP binding); GO:0005829 (cytosol); GO:0005886 (plasma membrane); GO:0006457 (protein folding); GO:0016887 (ATP hydrolysis activity); GO:0032991 (protein-containing complex); GO:0034605 (cellular response to heat); GO:0048471 (perinuclear region of cytoplasm); GO:0050821 (protein stabilization); GO:0051082 (GO:0051082); GO:0140662 (ATP-dependent protein folding chaperone)
KEGG	smil04141 (Protein processing in endoplasmic reticulum - Salvia miltiorrhiza (redroot sage)); smil04626 (Plant-pathogen interaction - Salvia miltiorrhiza (redroot sage))
Pfam	PF00183 (HSP90); PF02518 (HATPase_c); PF13589 (HATPase_c_3)
InterPro	-
eggNOG	-
NR	GeneID:130995925

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057777410.1`
2	Chloroplast stroma	叶绿体基质	1.00000	`XP_057777410.1`
3	Nucleus	细胞核	0.00000	`XP_057777410.1`
4	Chromosome	染色体	0.00000	`XP_057777410.1`
5	Centromere	着丝粒	0.00000	`XP_057777410.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:30745680`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A13
`Chr7:30745681`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B44,C19,C31,C35
`Chr7:30745687`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C73
`Chr7:30746087`	`CCT`	`C`	2bp_deletion	frameshift_variant	1	C48
`Chr7:30746087`	`CCT`	`C`	2bp_deletion	CDS_variant	1	C48
`Chr7:30747127`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B75
`Chr7:30747338`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A14,A16,B133,C73
`Chr7:30747813`	`TA`	`T`	1bp_deletion	frameshift_variant	1	C83
`Chr7:30747813`	`TA`	`T`	1bp_deletion	CDS_variant	1	C83
`Chr7:30747859`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B2
`Chr7:30748097`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B126,B46,B72,B88,C14
`Chr7:30748618`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B2

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057777410.1

799 aa

400

799

HATPase_c_3

HATPase_c

HSP90

PF13589 HATPase_c_3 110-245 aa PF02518 HATPase_c 111-267 aa PF00183 HSP90 273-765 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057777410.1`	Pfam	`PF13589`	HATPase_c_3	Domain	110	245	3e-09	37.7	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
`XP_057777410.1`	Pfam	`PF02518`	HATPase_c	Domain	111	267	1.4e-07	32.6	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
`XP_057777410.1`	Pfam	`PF00183`	HSP90	Family	273	765	2e-194	648.1	Hsp90 protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057921427.1
AATGGCAGAATCCACACCCTATATTCTTTCAACCAATACTTCCAAATTAAACCCCTAACCCCTAATTCTGCCATCCCACTTTCCAAATTCTAGAACCCTCCATCCCTCCCTTAAACCCATATTCACTCGCAACCCACACTCCAGTTATCTATTTCACCTCCCACCTAACCACGCGAAAGAGCCCCCCTTTTGCCTGTAATTCGATTCACCCACGAAGGAAACGGATTGAATTCAGACGAAAACATTAAGATTTTACCTGG...

CDS

1 records

下载 CDS FASTA

LOC130995925
ATGGCGCCTGTGTTGAGCAGAAGTCTGGCCTCCGCGGCGATGGCCGTAACCCCAAATATGACGTCCTTTTCTATCAATAGTGGTGGGAAGAGCAATAGGGCTTTGTTGAGAAGCGCTTTTCTTCCTAAGAGTGGGCTCAAGAACGCTTTTTTAAGGAGCGGATTGGAGTGGAAGGTGGAGAGGCGGCGGAGCGGAGTGGTGGTGAGATGTGACGCCTCCGCCGTGGCTGAGAAGGAGGCTCCGGAGAGCGCTGGAGAAAC...

Protein

1 records

下载 Protein FASTA

XP_057777410.1
MAPVLSRSLASAAMAVTPNMTSFSINSGGKSNRALLRSAFLPKSGLKNAFLRSGLEWKVERRRSGVVVRCDASAVAEKEAPESAGETYEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPALLGDSGDLEIRIKPDPDNGTITITDTGIGMTKEELIDCLGTIAQSGTSRFLKALKENQDLGADNSLIGQFGVGFYSAFLIANRVVVSTKSPRSDKQYVWESVADSSSYSIREETDPNKLLSRGT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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