当前解析结果
SmilChr07G002974| 统一新 Gene ID | SmilChr07G002974 |
|---|---|
| 名称 | SmilChr07G002974 |
| 描述 | uncharacterized SmilChr07G002974 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 30312797 - 30316855 / + |
| NCBI Gene ID | LOC130995938 |
|---|---|
| GeneID | 130995938 |
| locus_tag | - |
| NCBI Name | LOC130995938 |
| 原始查询 | LOC130995938 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os04g0467100; species=rice; confidence=weak |
| 产物 | hit=Os04g0467100; species=rice; confidence=weak |
| Arabidopsis | AT1G13650 (AT1G13650)uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:837926] identity=54.9; qcov=0.128; evalue=5.62e-14; confidence=weak |
| Rice | Os04g0467100- identity=54.5; qcov=0.179; evalue=2.03e-15; confidence=weak |
| GO | GO:0009786 (regulation of asymmetric cell division) |
| KEGG | - |
| Pfam | PF31003 (BASL) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130995938 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057777427.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057777427.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057777427.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057777427.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057777427.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:30315124 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B84,C44,C78 |
Chr7:30315167 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr7:30315336 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr7:30315485 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | C61 |
Chr7:30315485 |
GC |
G |
1bp_deletion | CDS_variant | 1 | C61 |
Chr7:30315521 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr7:30315551 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B68 |
Chr7:30315861 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C3,C70 |
Chr7:30315864 |
CT |
C |
1bp_deletion | frameshift_variant | 16 | A16,A4,B106,B126,B132,B27,B46,B53,B75,B78,B80,C15,C51,C6,C63,C67 |
Chr7:30315867 |
CGT |
C |
2bp_deletion | frameshift_variant | 16 | A16,A4,B106,B126,B132,B27,B46,B53,B75,B78,B80,C15,C51,C6,C63,C67 |
Chr7:30315963 |
TC |
T |
1bp_deletion | frameshift_variant | 9 | B124,B136,B25,B38,B39,B62,B66,C27,C55 |
Chr7:30316045 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B84,C44,C78 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057777427.1PF31003
BASL 335-554 aa
XP_057777430.1PF31003
BASL 335-554 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057777427.1 |
Pfam | PF31003 |
BASL | Family | 335 | 554 | 7e-12 | 46.6 | Breaking of asymmetry in the stomatal lineage protein |
XP_057777430.1 |
Pfam | PF31003 |
BASL | Family | 335 | 554 | 7e-12 | 46.6 | Breaking of asymmetry in the stomatal lineage protein |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。