当前解析结果
SmilChr07G003011| 统一新 Gene ID | SmilChr07G003011 |
|---|---|
| 名称 | SmilChr07G003011 |
| 描述 | uncharacterized SmilChr07G003011 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 30958590 - 30960344 / + |
| NCBI Gene ID | LOC130995948 |
|---|---|
| GeneID | 130995948 |
| locus_tag | - |
| NCBI Name | LOC130995948 |
| 原始查询 | LOC130995948 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Thioredoxin superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:818301]; symbol=AT2G37240; hit=AT2G37240; species=arabidopsis; confidence=low |
| 产物 | Thioredoxin superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:818301]; symbol=AT2G37240; hit=AT2G37240; species=arabidopsis; confidence=low |
| Arabidopsis | AT2G37240 (AT2G37240)Thioredoxin superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:818301] identity=27.4; qcov=0.397; evalue=3.22e-11; confidence=low |
| Rice | Os03g0284600- identity=25; qcov=0.378; evalue=2.31e-06; confidence=low |
| GO | GO:0016209 (antioxidant activity) |
| KEGG | - |
| Pfam | PF13911 (AhpC-TSA_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130995948 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 0.60000 | XP_057777454.1 |
| 2 | Lipid droplet | 脂滴 | 0.40000 | XP_057777454.1 |
| 3 | Mitochondrion membrane | 线粒体膜 | 0.20000 | XP_057777454.1 |
| 4 | Mitochondrion outer membrane | 线粒体外膜 | 0.20000 | XP_057777454.1 |
| 5 | Endoplasmic reticulum | 内质网 | 0.20000 | XP_057777454.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:30958703 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B75 |
Chr7:30958879 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B91 |
Chr7:30958989 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B64 |
Chr7:30959027 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B34,B45 |
Chr7:30959075 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B129 |
Chr7:30959261 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B26,B5,C59,D3 |
Chr7:30959316 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr7:30959345 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A21,B101 |
Chr7:30959572 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B84,C44 |
Chr7:30959848 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B129 |
Chr7:30959876 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B75 |
Chr7:30959902 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B84,C44 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057777454.1PF13911
AhpC-TSA_2 271-386 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057777454.1 |
Pfam | PF13911 |
AhpC-TSA_2 | Domain | 271 | 386 | 1.1e-22 | 81.3 | AhpC/TSA antioxidant enzyme |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。