Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G003103`

染色体: Chr07 坐标: 32861194-32864167 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G003103`
名称	SmilChr07G003103
描述	uncharacterized SmilChr07G003103
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	32861194 - 32864167 / `-`

ID 对照

NCBI Gene ID	`LOC130996060`
GeneID	`130996060`
locus_tag	`-`
NCBI Name	`LOC130996060`
原始查询	`LOC130996060`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Rubisco methyltransferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:839075]; symbol=AT1G24610; hit=AT1G24610; species=arabidopsis; confidence=high
产物	Rubisco methyltransferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:839075]; symbol=AT1G24610; hit=AT1G24610; species=arabidopsis; confidence=high
Arabidopsis	`AT1G24610` (AT1G24610) Rubisco methyltransferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:839075] identity=64.5; qcov=0.992; evalue=0; confidence=high
Rice	`Os02g0733800` (OsSET13) - identity=59.1; qcov=0.943; evalue=0; confidence=high
GO	GO:0005515 (protein binding); GO:0016279 (protein-lysine N-methyltransferase activity); GO:0018026 (peptidyl-lysine monomethylation)
KEGG	-
Pfam	PF00856 (SET); PF09273 (Rubis-subs-bind)
InterPro	-
eggNOG	-
NR	GeneID:130996060

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057777551.1`
2	Chloroplast stroma	叶绿体基质	1.00000	`XP_057777551.1`
3	Nucleus	细胞核	0.00000	`XP_057777551.1`
4	Chromosome	染色体	0.00000	`XP_057777551.1`
5	Centromere	着丝粒	0.00000	`XP_057777551.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:32861582`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B81,C72
`Chr7:32861609`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B34,B45
`Chr7:32861664`	`AC`	`A`	1bp_deletion	frameshift_variant	1	B140
`Chr7:32861664`	`AC`	`A`	1bp_deletion	CDS_variant	1	B140
`Chr7:32861666`	`C`	`CA`	1bp_insertion	frameshift_variant	125	A11,A13,A15,A19,A2,A20,A21,A24,A25,A4,A5,A8,A9,B102,B103,B105,B106,B108,B109,B11,B110,B111,B112,B113,B114,B118,B119,B12,B122,B123,B129,B13,B131,B134,B135,B136,B138,B139,B14,B140,B17,B19,B20,B21,B22,B23,B27,B30,B33,B36,B37,B41,B50,B55,B59,B61,B62,B64,B67,B70,B72,B73,B76,B77,B80,B83,B89,B90,B91,B92,B94,B97,B98,C1,C10,C11,C12,C13,C14,C22,C23,C25,C26,C27,C29,C3,C30,C31,C35,C37,C39,C40,C41,C42,C44,C45,C46,C47,C48,C53,C54,C55,C6,C63,C64,C66,C67,C69,C7,C71,C73,C74,C75,C76,C77,C78,C79,C80,C86,C87,C9,D2,D4,D5,D8
`Chr7:32861710`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B49,B64,B79,B93,C36
`Chr7:32861954`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr7:32862279`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A18
`Chr7:32862320`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B53
`Chr7:32862630`	`TC`	`T`	1bp_deletion	frameshift_variant	2	B30,B99
`Chr7:32862630`	`TC`	`T`	1bp_deletion	CDS_variant	2	B30,B99
`Chr7:32862638`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B13,B66,C32,C68

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057777551.1

477 aa

238

477

SET

Rubis-subs-bind

PF00856 SET 64-282 aa PF09273 Rubis-subs-bind 332-451 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057777551.1`	Pfam	`PF00856`	SET	Family	64	282	4.9e-07	30.9	SET domain
`XP_057777551.1`	Pfam	`PF09273`	Rubis-subs-bind	Domain	332	451	1.3e-16	62.2	Rubisco LSMT substrate-binding

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057921568.1
GGACTACGTCACTACGCACAAACGCAACCGCAGACAGGAATTTTTTCTGAAGGAAAAGTGAGATAGACGAACTAGATGAAGCTAATGGCGAGCTCACTGATCCACGTGCGGCCGCTAGCGTCCGCCGCCGCTTCATCTTTCCTCCGCACTTCCCGTCTGGTACCTCAGCCGCCGGACCTCATAAAGTGGGTCCGTCGAGAAGGCGGGTTTGTGCACCAGTCAGTAAAGATAGCATTTTTGGAGGAGGAGAAGCCCAACGG...

CDS

1 records

下载 CDS FASTA

LOC130996060
ATGAAGCTAATGGCGAGCTCACTGATCCACGTGCGGCCGCTAGCGTCCGCCGCCGCTTCATCTTTCCTCCGCACTTCCCGTCTGGTACCTCAGCCGCCGGACCTCATAAAGTGGGTCCGTCGAGAAGGCGGGTTTGTGCACCAGTCAGTAAAGATAGCATTTTTGGAGGAGGAGAAGCCCAACGGGCTCGGGCTCGGGCTCGTTGCCTCTGAGGATATCAAAAAGGGATCCGACCTCATTGTTCTTCCCGACCACATTCC...

Protein

1 records

下载 Protein FASTA

XP_057777551.1
MKLMASSLIHVRPLASAAASSFLRTSRLVPQPPDLIKWVRREGGFVHQSVKIAFLEEEKPNGLGLGLVASEDIKKGSDLIVLPDHIPLRFEAKYAESSALTDLARYVPEELWAMKLGLRLLQERAKKGSFWWPYISNLPETHSVPIFFPGEDIKNLQYAPLLQQVNKRCRFLLEFDKLVKDALENVELDDHPFGGQEIDASALGWAMSAVSSRAFRLYGSKRPDGTRDDAPMLLPLIDMCNHSFEANAKIIQEKEASKEN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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