Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G003150`

染色体: Chr07 坐标: 33410022-33421967 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G003150`
名称	SmilChr07G003150
描述	nuclear pore complex protein NUP155-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	33410022 - 33421967 / `-`

ID 对照

NCBI Gene ID	`LOC130996067`
GeneID	`130996067`
locus_tag	`-`
NCBI Name	`LOC130996067`
原始查询	`LOC130996067`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	nuclear pore complex protein NUP155-like
产物	nuclear pore complex protein NUP155-like
Arabidopsis	`AT1G14850` (NUP155) nucleoporin 155 [Source:NCBI gene (formerly Entrezgene);Acc:838050] identity=69.3; qcov=1; evalue=0; confidence=high
Rice	`Os06g0305200` - identity=62.5; qcov=1; evalue=0; confidence=high
GO	GO:0000972 (transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery); GO:0005643 (nuclear pore); GO:0006405 (RNA export from nucleus); GO:0006606 (protein import into nucleus); GO:0017056 (structural constituent of nuclear pore); GO:0036228 (protein localization to nuclear inner membrane); GO:0044611 (nuclear pore inner ring)
KEGG	smil03013 (Nucleocytoplasmic transport - Salvia miltiorrhiza (redroot sage))
Pfam	PF03177 (Nucleoporin_C); PF08801 (Nucleoporin_N)
InterPro	-
eggNOG	-
NR	GeneID:130996067

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057777560.1`
2	Nucleus membrane	核膜	0.60000	`XP_057777561.1`
3	Nuclear pore complex	核孔复合体	0.20000	`XP_057777560.1`
4	Cytoplasm	细胞质	0.20000	`XP_057777560.1`
5	Chromosome	染色体	0.00000	`XP_057777560.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:33413262`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B88
`Chr7:33413401`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A10,B121,B72,B79,C10
`Chr7:33413584`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C65
`Chr7:33414313`	`AC`	`A`	1bp_deletion	frameshift_variant	1	C18
`Chr7:33414313`	`AC`	`A`	1bp_deletion	CDS_variant	1	C18
`Chr7:33416291`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B53
`Chr7:33418317`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C41

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057777560.1

1486 aa

743

1486

Nucleoporin_N

Nucleoporin_C

PF08801 Nucleoporin_N 55-501 aa PF03177 Nucleoporin_C 651-1403 aa

XP_057777561.1

1296 aa

648

1296

Nucleoporin_N

Nucleoporin_C

PF08801 Nucleoporin_N 2-311 aa PF03177 Nucleoporin_C 461-1213 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057777560.1`	Pfam	`PF08801`	Nucleoporin_N	Repeat	55	501	2.6e-76	257.8	Nup133 N terminal like
`XP_057777560.1`	Pfam	`PF03177`	Nucleoporin_C	Repeat	651	1403	1.9e-69	235.8	Non-repetitive/WGA-negative nucleoporin C-terminal
`XP_057777561.1`	Pfam	`PF08801`	Nucleoporin_N	Repeat	2	311	9.4e-42	144.0	Nup133 N terminal like
`XP_057777561.1`	Pfam	`PF03177`	Nucleoporin_C	Repeat	461	1213	1.2e-69	236.5	Non-repetitive/WGA-negative nucleoporin C-terminal

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057921577.1
AATTTCTCTTCACCTCAGAAAATTCAATTATTCACTTCATTTCTCCCCAGTCCACGGAATATTCCATCTGGTCCATCTAGGGCTTGAATTTGCAGTATTGCTGTTCAAGCCCTATTTTTCGACTTGAATTCATAATTTCTCACGGTCGTGGCCTAAGGGATTTGGTTAAATAATTCGTTTCCAGTTGAAGATGGTTGTTTGGGAGAATGAGGTAGTGATGCGAGACGTCACCAATGCGGGCCTGATCGTTAGCGATCGCA...

XM_057921578.1
ATGGGAGTTGCCTCCAGTGTTGATTGAAAGATATAACACTGCTGGTGGAGAAGGAACAGCTCTGTGTGGAATATTTCCAGAAATACGACGGGCTTGGGCATCAGTTGATAACTCCTTATTTCTTTGGAGATTTGATAAGTGAATATAGTGGGGAGGAACAGGCTATTTGTGCTGTGGGGCTTGCAAAATCCAAGCCTGGTGTTTTCGTTGAAGCTATTCAGTATCTTCTAGTTCTGGCAACTCCTGTGGAGCTGATTCTT...

CDS

2 records

下载 CDS FASTA

LOC130996067
ATGGTTGTTTGGGAGAATGAGGTAGTGATGCGAGACGTCACCAATGCGGGCCTGATCGTTAGCGATCGCATTAGCCGGGAAATTGGGGCGCAGCTCGACCTCGAAGAAGCTTTAGAAGCATCTAGATACTCTAGCCATCCTTATTCTACTCATCCCCGCGAGTGGCCTCCTTTGGTGGAAGTTGTGGACACATGGGAGTTGCCTCCAGTGTTGATTGAAAGATATAACACTGCTGGTGGAGAAGGAACAGCTCTGTGTGG...

LOC130996067
ATGACTTGCATCACTTGCACCGATAGGGGGCATATTTTTCTAGCTGGCCGAGATGGTCATGTATATGAATTGCAGTATACGACTGGTTCAGGATGGCAAAAGCGGTGCCGTAAAATCTGCCTTACTGCTGGTCTGGGAAGTGTAATTTCAAGGTGGGTTGTGCCTAATGTTTTCAAATTTGGAGCTGTGGACCCCATTGTCGAAATGGTTGTTGATTCCGATAGACATGTTCTATATGCGCGTACAGAAGATATGAAAAT...

Protein

2 records

下载 Protein FASTA

XP_057777560.1
MVVWENEVVMRDVTNAGLIVSDRISREIGAQLDLEEALEASRYSSHPYSTHPREWPPLVEVVDTWELPPVLIERYNTAGGEGTALCGIFPEIRRAWASVDNSLFLWRFDKWDGQCPEYSGEEQAICAVGLAKSKPGVFVEAIQYLLVLATPVELILVGVCCSGSSDGTDPYAEVSLQPLPEYTIPSDGVTMTCITCTDRGHIFLAGRDGHVYELQYTTGSGWQKRCRKICLTAGLGSVISRWVVPNVFKFGAVDPIVEMV...

XP_057777561.1
MTCITCTDRGHIFLAGRDGHVYELQYTTGSGWQKRCRKICLTAGLGSVISRWVVPNVFKFGAVDPIVEMVVDSDRHVLYARTEDMKIQVFSLGLNGDGPFKKVAEERNLITQRESNYGGRQQAGQRAPARPTKSSIVSISPLSTLESKWLHLVAVLSDGRRMYLSTSPSGGNNGAVGGLAGLGKPSCLKVVTTRPSPPIGVSGGLAFGALSLAGRSQSDDLSLKIESAYYSSGTLVLSDSSPSAVSSLLLVNKDTQSLSS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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