Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G003157`

染色体: Chr07 坐标: 33487062-33491968 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G003157`
名称	SmilChr07G003157
描述	WD repeat-containing protein 55-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	33487062 - 33491968 / `+`

ID 对照

NCBI Gene ID	`LOC130996085`
GeneID	`130996085`
locus_tag	`-`
NCBI Name	`LOC130996085`
原始查询	`LOC130996085`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	WD repeat-containing protein 55-like
产物	WD repeat-containing protein 55-like
Arabidopsis	`AT2G34260` (WDR55) transducin family protein / WD-40 repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:817987] identity=70; qcov=0.944; evalue=1.62e-166; confidence=high
Rice	`Os07g0660700` (OsWD40-149) - identity=67; qcov=0.877; evalue=2.48e-152; confidence=high
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00400 (WD40); PF12894 (ANAPC4_WD40); PF24796 (WDR55)
InterPro	-
eggNOG	-
NR	GeneID:130996085

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057777587.1`
2	Nucleoplasm	核质	1.00000	`XP_057777587.1`
3	Cytoplasm	细胞质	0.60000	`XP_057777587.1`
4	Cytosol	细胞质基质	0.40000	`XP_057777587.1`
5	Nuclear body	核内小体	0.20000	`XP_057777587.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:33488000`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B129
`Chr7:33488131`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A20,C54
`Chr7:33488247`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B124
`Chr7:33488434`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A13
`Chr7:33488587`	`C`	`T`	EMS_canonical_SNV	stop_gained	2	A20,C54
`Chr7:33488587`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A20,C54
`Chr7:33490756`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B25,B29
`Chr7:33490757`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C46
`Chr7:33491496`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B111

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057777587.1

342 aa

171

342

WDR55

ANAPC4_WD40

WD40

PF24796 WDR55 2-294 aa PF12894 ANAPC4_WD40 13-93 aa PF00400 WD40 92-121 aa PF00400 WD40 126-161 aa PF00400 WD40 259-291 aa

XP_057777589.1

342 aa

171

342

WDR55

ANAPC4_WD40

WD40

PF24796 WDR55 2-294 aa PF12894 ANAPC4_WD40 13-93 aa PF00400 WD40 92-121 aa PF00400 WD40 126-161 aa PF00400 WD40 259-291 aa

XP_057777590.1

342 aa

171

342

WDR55

ANAPC4_WD40

WD40

PF24796 WDR55 2-294 aa PF12894 ANAPC4_WD40 13-93 aa PF00400 WD40 92-121 aa PF00400 WD40 126-161 aa PF00400 WD40 259-291 aa

XP_057777591.1

342 aa

171

342

WDR55

ANAPC4_WD40

WD40

PF24796 WDR55 2-294 aa PF12894 ANAPC4_WD40 13-93 aa PF00400 WD40 92-121 aa PF00400 WD40 126-161 aa PF00400 WD40 259-291 aa

XP_057777592.1

342 aa

171

342

WDR55

ANAPC4_WD40

WD40

PF24796 WDR55 2-294 aa PF12894 ANAPC4_WD40 13-93 aa PF00400 WD40 92-121 aa PF00400 WD40 126-161 aa PF00400 WD40 259-291 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057777587.1`	Pfam	`PF24796`	WDR55	Repeat	2	294	1.4e-99	333.6	WDR55
`XP_057777587.1`	Pfam	`PF12894`	ANAPC4_WD40	Repeat	13	93	7.8e-10	39.6	Anaphase-promoting complex subunit 4 WD40 domain
`XP_057777587.1`	Pfam	`PF00400`	WD40	Repeat	92	121	9.5e-21	74.0	WD domain, G-beta repeat
`XP_057777587.1`	Pfam	`PF00400`	WD40	Repeat	126	161	9.5e-21	74.0	WD domain, G-beta repeat
`XP_057777587.1`	Pfam	`PF00400`	WD40	Repeat	259	291	9.5e-21	74.0	WD domain, G-beta repeat
`XP_057777589.1`	Pfam	`PF24796`	WDR55	Repeat	2	294	1.4e-99	333.6	WDR55
`XP_057777589.1`	Pfam	`PF12894`	ANAPC4_WD40	Repeat	13	93	7.8e-10	39.6	Anaphase-promoting complex subunit 4 WD40 domain
`XP_057777589.1`	Pfam	`PF00400`	WD40	Repeat	92	121	9.5e-21	74.0	WD domain, G-beta repeat
`XP_057777589.1`	Pfam	`PF00400`	WD40	Repeat	126	161	9.5e-21	74.0	WD domain, G-beta repeat
`XP_057777589.1`	Pfam	`PF00400`	WD40	Repeat	259	291	9.5e-21	74.0	WD domain, G-beta repeat
`XP_057777590.1`	Pfam	`PF24796`	WDR55	Repeat	2	294	1.4e-99	333.6	WDR55
`XP_057777590.1`	Pfam	`PF12894`	ANAPC4_WD40	Repeat	13	93	7.8e-10	39.6	Anaphase-promoting complex subunit 4 WD40 domain
`XP_057777590.1`	Pfam	`PF00400`	WD40	Repeat	92	121	9.5e-21	74.0	WD domain, G-beta repeat
`XP_057777590.1`	Pfam	`PF00400`	WD40	Repeat	126	161	9.5e-21	74.0	WD domain, G-beta repeat
`XP_057777590.1`	Pfam	`PF00400`	WD40	Repeat	259	291	9.5e-21	74.0	WD domain, G-beta repeat
`XP_057777591.1`	Pfam	`PF24796`	WDR55	Repeat	2	294	1.4e-99	333.6	WDR55
`XP_057777591.1`	Pfam	`PF12894`	ANAPC4_WD40	Repeat	13	93	7.8e-10	39.6	Anaphase-promoting complex subunit 4 WD40 domain
`XP_057777591.1`	Pfam	`PF00400`	WD40	Repeat	92	121	9.5e-21	74.0	WD domain, G-beta repeat
`XP_057777591.1`	Pfam	`PF00400`	WD40	Repeat	126	161	9.5e-21	74.0	WD domain, G-beta repeat
`XP_057777591.1`	Pfam	`PF00400`	WD40	Repeat	259	291	9.5e-21	74.0	WD domain, G-beta repeat
`XP_057777592.1`	Pfam	`PF24796`	WDR55	Repeat	2	294	1.4e-99	333.6	WDR55
`XP_057777592.1`	Pfam	`PF12894`	ANAPC4_WD40	Repeat	13	93	7.8e-10	39.6	Anaphase-promoting complex subunit 4 WD40 domain
`XP_057777592.1`	Pfam	`PF00400`	WD40	Repeat	92	121	9.5e-21	74.0	WD domain, G-beta repeat
`XP_057777592.1`	Pfam	`PF00400`	WD40	Repeat	126	161	9.5e-21	74.0	WD domain, G-beta repeat
`XP_057777592.1`	Pfam	`PF00400`	WD40	Repeat	259	291	9.5e-21	74.0	WD domain, G-beta repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XM_057921604.1
TTCAAATTTTAGCGTTTTAAATTTATGGTTTTCTTTCTCCTCCCAGCCTCCCTAACCGCCGCCCCCATTCCTCCCACCCACACCCGCCGCCCCGAGGCCCCGCCGGCGCCGCGCCTTCTGCATCGAGCCTCGCCGCCGCCCAGGCCTAAGCCTCTGCCTCGCCATCGGCGCATCACCCACCAGCGCCAGGGCCCCTCCACGCCCAGGTCCTCCCAGCCGAACCGACCCGCGACGCCATCGCCCAGGCCCGGCTGTTCCTC...

XM_057921607.1
AAATTTATGGTTTTCTTTCTCCTCCCAGCCTCCCTAACCGCCGCCCCCATTCCTCCCACCCACACCCGCCGCCCCGAGGCCCCGCCGGCGCCGCGCCTTCTGCATCGAGCCTCGCCGCCGCCCAGGCCTAAGCCTCTGCCTCGCCATCGGCGCATCACCCACCAGCGCCAGGGCCCCTCCACGCCCAGGTCCTCCCAGCCGAACCGACCCGCGACGCCATCGCCCAGGCCCGGCTGTTCCTCGCCGTCGCCCAAGCGCCA...

CDS

5 records

下载 CDS FASTA

LOC130996085
ATGGAGATTGATTTGGAAAAGCTTCCGTTTGATCTCGACTTTCATCCATCAACTAATCTCATCGCCGCTGGTCTCATTACCGGCCATCTCCTACTGTACCGTTATGATGCTGAAGCTACGCCTCAAAGGTTGCTAGAAGTGAATGCTCATACCGAATCATGTAGGGCTCTCCGTTTTGTCAACGAAGGGCGTGCTATAGTCACCGGGTCTCCAGATTTTTCCATTCTTGCGACAGATGTCGAAACTGGTGCGGCAATTGC...

Protein

5 records

下载 Protein FASTA

XP_057777587.1
MEIDLEKLPFDLDFHPSTNLIAAGLITGHLLLYRYDAEATPQRLLEVNAHTESCRALRFVNEGRAIVTGSPDFSILATDVETGAAIARFDNSHGAAVNRIVNLTESTIASGDDEGCIKVWDTRQPTCCNTLNVHEEYISDMTFASDSLKLIGTSGDGTLSVCNLRSNKVQTRSEFSEDELLSVVIMKNGRKVICGTQSGTLLLYSWGFFKDCSDRFVDLSPNSVDAMLKLDEERLITGSENGIISLVGILPNRIIQPIAE...

XP_057777589.1
MEIDLEKLPFDLDFHPSTNLIAAGLITGHLLLYRYDAEATPQRLLEVNAHTESCRALRFVNEGRAIVTGSPDFSILATDVETGAAIARFDNSHGAAVNRIVNLTESTIASGDDEGCIKVWDTRQPTCCNTLNVHEEYISDMTFASDSLKLIGTSGDGTLSVCNLRSNKVQTRSEFSEDELLSVVIMKNGRKVICGTQSGTLLLYSWGFFKDCSDRFVDLSPNSVDAMLKLDEERLITGSENGIISLVGILPNRIIQPIAE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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