Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr07G003231

染色体: Chr07 坐标: 34302185-34310027 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr07G003231
名称SmilChr07G003231
描述uncharacterized SmilChr07G003231
染色体 / SeqIDChr07 / NC_080393.1
坐标与链方向34302185 - 34310027 / -

ID 对照

NCBI Gene IDLOC130996137
GeneID130996137
locus_tag-
NCBI NameLOC130996137
原始查询LOC130996137

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述NADH-ubiquinone oxidoreductase [Source:NCBI gene (formerly Entrezgene);Acc:843056]; symbol=AT1G67350; hit=AT1G67350; species=arabidopsis; confidence=medium
产物NADH-ubiquinone oxidoreductase [Source:NCBI gene (formerly Entrezgene);Acc:843056]; symbol=AT1G67350; hit=AT1G67350; species=arabidopsis; confidence=medium
ArabidopsisAT1G67350 (AT1G67350)
NADH-ubiquinone oxidoreductase [Source:NCBI gene (formerly Entrezgene);Acc:843056]
identity=76.5; qcov=0.659; evalue=9.92e-44; confidence=medium
RiceOs03g0685900
-
identity=59.8; qcov=0.674; evalue=6.45e-37; confidence=medium
GOGO:0005747 (GO:0005747)
KEGG-
PfamPF17250 (NDUFB11)
InterPro-
eggNOG-
NRGeneID:130996137

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 0.80000 XP_057777632.1
2 Cytoplasm 细胞质 0.20000 XP_057777632.1
3 Nucleus 细胞核 0.00000 XP_057777632.1
4 Chromosome 染色体 0.00000 XP_057777632.1
5 Centromere 着丝粒 0.00000 XP_057777632.1

进入亚细胞定位查询

EMS 诱变突变

该基因暂未检索到已上线的精选 EMS CDS / LoF 突变,或 EMS 突变库仍在构建。

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057777632.1
129 aa
N
1
64
129
NDUFB11
C
PF17250 NDUFB11 42-126 aa
XP_057777633.1
129 aa
N
1
64
129
NDUFB11
C
PF17250 NDUFB11 42-126 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057777632.1 Pfam PF17250 NDUFB11 Family 42 126 5.4e-46 155.9 NADH-ubiquinone oxidoreductase 11 kDa subunit
XP_057777633.1 Pfam PF17250 NDUFB11 Family 42 126 5.4e-46 155.9 NADH-ubiquinone oxidoreductase 11 kDa subunit

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057921650.1
GGGCTTCAAATAATCAGTTTTATGGGCTTTTTGAGAGATAGAAAGCCCATTAATCTAACCATAAATTTCAGTAATTTTACTCATTTTCATGTTTTTTTTTCAGGTTCTAGATCAATTTCCTTGAGGACTCTCGAAGATTACAAGATGGGGTTCATAATGGAATTTGCGGAGAATTTGGTGTTGCGATTGATGGAGGATCCAAACGAGAGAGACAGGAAAGCGAGGGAGAGATTGTACGAGCGGAAGGAGCAGTGCAAGAA...
XM_057921649.1
GGGCTTCAAATAATCAGTTTTATGGGCTTTTTGAGAGATAGAAAGCCCATTAATCTAACCATAAATTTCAGTAATTTTACTCATTTTCATGTTTTTTTTTCAGGTTCTAGATCAATTTCCTTGAGGACTCTCGAAGATTACAAGATGGGGTTCATAATGGAATTTGCGGAGAATTTGGTGTTGCGATTGATGGAGGATCCAAACGAGAGAGACAGGAAAGCGAGGGAGAGATTGTACGAGCGGAAGGAGCAGTGCAAGAA...

CDS

2 records

下载 CDS FASTA
LOC130996137
ATGGGCTTTTTGAGAGATAGAAAGCCCATTAATCTAACCATAAATTTCAGTAATTTTACTCATTTTCATGTTTTTTTTTCAGGTTCTAGATCAATTTCCTTGAGGACTCTCGAAGATTACAAGATGGGGTTCATAATGGAATTTGCGGAGAATTTGGTGTTGCGATTGATGGAGGATCCAAACGAGAGAGACAGGAAAGCGAGGGAGAGATTGTACGAGCGGAAGGAGCAGTGCAAGAAGACTCTGGAGATGCATCGGTT...
LOC130996137
ATGGGCTTTTTGAGAGATAGAAAGCCCATTAATCTAACCATAAATTTCAGTAATTTTACTCATTTTCATGTTTTTTTTTCAGGTTCTAGATCAATTTCCTTGAGGACTCTCGAAGATTACAAGATGGGGTTCATAATGGAATTTGCGGAGAATTTGGTGTTGCGATTGATGGAGGATCCAAACGAGAGAGACAGGAAAGCGAGGGAGAGATTGTACGAGCGGAAGGAGCAGTGCAAGAAGACTCTGGAGATGCATCGGTT...

Protein

2 records

下载 Protein FASTA
XP_057777632.1
MGFLRDRKPINLTINFSNFTHFHVFFSGSRSISLRTLEDYKMGFIMEFAENLVLRLMEDPNERDRKARERLYERKEQCKKTLEMHRLPLRPYGFWTFERHNAQIFWDEQISNVQGRRDPYDELIEEYSK
XP_057777633.1
MGFLRDRKPINLTINFSNFTHFHVFFSGSRSISLRTLEDYKMGFIMEFAENLVLRLMEDPNERDRKARERLYERKEQCKKTLEMHRLPLRPYGFWTFERHNAQIFWDEQISNVQGRRDPYDELIEEYSK

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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