当前解析结果
SmilChr07G003281| 统一新 Gene ID | SmilChr07G003281 |
|---|---|
| 名称 | SmilChr07G003281 |
| 描述 | PHD finger protein MALE MEIOCYTE DEATH 1-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 34548548 - 34550901 / + |
| NCBI Gene ID | LOC130996155 |
|---|---|
| GeneID | 130996155 |
| locus_tag | - |
| NCBI Name | LOC130996155 |
| 原始查询 | LOC130996155 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | PHD finger protein MALE MEIOCYTE DEATH 1-like |
| 产物 | PHD finger protein MALE MEIOCYTE DEATH 1-like |
| Arabidopsis | AT2G01810 (AT2G01810)RING/FYVE/PHD zinc finger superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:814712] identity=35.7; qcov=1.14; evalue=1.22e-113; confidence=medium |
| Rice | Os03g0716200- identity=31.8; qcov=1.03; evalue=3.4e-73; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | PF25565 (Ubiquitin_At1g33420); PF25874 (WHD_plant_repro); PF27744 (MS1_N); PF27748 (MS1_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130996155 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057777646.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057777646.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057777646.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057777646.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057777646.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:34548822 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B65,D6 |
Chr7:34548922 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B108,B132,C35 |
Chr7:34549232 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B124 |
Chr7:34549284 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B104,B78 |
Chr7:34549784 |
TC |
T |
1bp_deletion | frameshift_variant | 7 | B109,B121,B128,B29,B69,C48,C75 |
Chr7:34549820 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A5,B58,B65,B7,C77 |
Chr7:34549843 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B12,B55 |
Chr7:34549895 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | C18,C2,C73,C76,C84 |
Chr7:34550205 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B53,C1 |
Chr7:34550266 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C46 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057777646.1PF27744
MS1_N 198-238 aa
PF27748
MS1_C 243-284 aa
PF25874
WHD_plant_repro 318-402 aa
PF25565
Ubiquitin_At1g33420 449-538 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057777646.1 |
Pfam | PF27744 |
MS1_N | Domain | 198 | 238 | 2.5e-12 | 47.3 | PHD finger protein MALE STERILITY 1-like, N-terminal domain |
XP_057777646.1 |
Pfam | PF27748 |
MS1_C | Domain | 243 | 284 | 5.6e-11 | 42.4 | PHD finger protein MALE STERILITY 1-like, C-terminal domain |
XP_057777646.1 |
Pfam | PF25874 |
WHD_plant_repro | Domain | 318 | 402 | 1.6e-29 | 102.3 | Winged helix-turn-helix domain in plant reproductive proteins |
XP_057777646.1 |
Pfam | PF25565 |
Ubiquitin_At1g33420 | Domain | 449 | 538 | 5.5e-21 | 75.0 | At1g33420-like, ubiquitin-like domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。