当前解析结果
SmilChr07G003311| 统一新 Gene ID | SmilChr07G003311 |
|---|---|
| 名称 | SmilChr07G003311 |
| 描述 | histidine kinase 4 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 35146445 - 35153528 / + |
| NCBI Gene ID | LOC130996178 |
|---|---|
| GeneID | 130996178 |
| locus_tag | - |
| NCBI Name | LOC130996178 |
| 原始查询 | LOC130996178 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | histidine kinase 4 |
| 产物 | histidine kinase 4 |
| Arabidopsis | AT2G01830 (WOL)CHASE domain containing histidine kinase protein [Source:NCBI gene (formerly Entrezgene);Acc:814714] identity=66.5; qcov=1; evalue=0; confidence=high |
| Rice | Os03g0717700 (HK4)- identity=60; qcov=0.955; evalue=0; confidence=high |
| GO | GO:0000155 (phosphorelay sensor kinase activity); GO:0000160 (phosphorelay signal transduction system); GO:0016310 (phosphorylation) |
| KEGG | smil04075 (Plant hormone signal transduction - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00072 (Response_reg); PF00512 (HisKA); PF02518 (HATPase_c); PF03924 (CHASE); PF24896 (Receiver_CRE1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130996178 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057777670.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 1.00000 | XP_057777670.1 |
| 3 | Golgi apparatus | 高尔基体 | 0.20000 | XP_057777670.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057777670.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057777670.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:35147566 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr7:35148071 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B124 |
Chr7:35148144 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B21,C26 |
Chr7:35151408 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B124 |
Chr7:35151872 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr7:35151979 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D1 |
Chr7:35152605 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C51 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057777670.1PF03924
CHASE 109-296 aa
PF00512
HisKA 386-450 aa
PF02518
HATPase_c 600-676 aa
PF24896
Receiver_CRE1 696-834 aa
PF00072
Response_reg 862-983 aa
XP_057777671.1PF03924
CHASE 109-296 aa
PF00512
HisKA 386-450 aa
PF02518
HATPase_c 600-676 aa
PF24896
Receiver_CRE1 696-834 aa
PF00072
Response_reg 862-983 aa
XP_057777672.1PF03924
CHASE 109-290 aa
PF00512
HisKA 380-444 aa
PF02518
HATPase_c 594-670 aa
PF24896
Receiver_CRE1 690-828 aa
PF00072
Response_reg 856-977 aa
XP_057777673.1PF03924
CHASE 109-290 aa
PF00512
HisKA 380-444 aa
PF02518
HATPase_c 594-670 aa
PF24896
Receiver_CRE1 690-828 aa
PF00072
Response_reg 856-977 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057777670.1 |
Pfam | PF03924 |
CHASE | Domain | 109 | 296 | 2.5e-36 | 126.0 | CHASE domain |
XP_057777670.1 |
Pfam | PF00512 |
HisKA | Domain | 386 | 450 | 1.3e-20 | 73.9 | His Kinase A (phospho-acceptor) domain |
XP_057777670.1 |
Pfam | PF02518 |
HATPase_c | Domain | 600 | 676 | 1e-23 | 84.6 | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase |
XP_057777670.1 |
Pfam | PF24896 |
Receiver_CRE1 | Domain | 696 | 834 | 1.9e-52 | 177.8 | AHK4/CRE1/WOL first receiver domain |
XP_057777670.1 |
Pfam | PF00072 |
Response_reg | Domain | 862 | 983 | 2e-22 | 80.2 | Response regulator receiver domain |
XP_057777671.1 |
Pfam | PF03924 |
CHASE | Domain | 109 | 296 | 2.5e-36 | 126.0 | CHASE domain |
XP_057777671.1 |
Pfam | PF00512 |
HisKA | Domain | 386 | 450 | 1.3e-20 | 73.9 | His Kinase A (phospho-acceptor) domain |
XP_057777671.1 |
Pfam | PF02518 |
HATPase_c | Domain | 600 | 676 | 1e-23 | 84.6 | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase |
XP_057777671.1 |
Pfam | PF24896 |
Receiver_CRE1 | Domain | 696 | 834 | 1.9e-52 | 177.8 | AHK4/CRE1/WOL first receiver domain |
XP_057777671.1 |
Pfam | PF00072 |
Response_reg | Domain | 862 | 983 | 2e-22 | 80.2 | Response regulator receiver domain |
XP_057777672.1 |
Pfam | PF03924 |
CHASE | Domain | 109 | 290 | 5.9e-40 | 137.8 | CHASE domain |
XP_057777672.1 |
Pfam | PF00512 |
HisKA | Domain | 380 | 444 | 1.3e-20 | 73.9 | His Kinase A (phospho-acceptor) domain |
XP_057777672.1 |
Pfam | PF02518 |
HATPase_c | Domain | 594 | 670 | 9.9e-24 | 84.6 | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase |
XP_057777672.1 |
Pfam | PF24896 |
Receiver_CRE1 | Domain | 690 | 828 | 1.9e-52 | 177.8 | AHK4/CRE1/WOL first receiver domain |
XP_057777672.1 |
Pfam | PF00072 |
Response_reg | Domain | 856 | 977 | 1.9e-22 | 80.2 | Response regulator receiver domain |
XP_057777673.1 |
Pfam | PF03924 |
CHASE | Domain | 109 | 290 | 5.9e-40 | 137.8 | CHASE domain |
XP_057777673.1 |
Pfam | PF00512 |
HisKA | Domain | 380 | 444 | 1.3e-20 | 73.9 | His Kinase A (phospho-acceptor) domain |
XP_057777673.1 |
Pfam | PF02518 |
HATPase_c | Domain | 594 | 670 | 9.9e-24 | 84.6 | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase |
XP_057777673.1 |
Pfam | PF24896 |
Receiver_CRE1 | Domain | 690 | 828 | 1.9e-52 | 177.8 | AHK4/CRE1/WOL first receiver domain |
XP_057777673.1 |
Pfam | PF00072 |
Response_reg | Domain | 856 | 977 | 1.9e-22 | 80.2 | Response regulator receiver domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
4 records
下载 cDNA FASTA4 records
下载 CDS FASTA4 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。