当前解析结果
SmilChr07G003339| 统一新 Gene ID | SmilChr07G003339 |
|---|---|
| 名称 | SmilChr07G003339 |
| 描述 | BTB/POZ and MATH domain-containing protein 3-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 35801258 - 35802758 / - |
| NCBI Gene ID | LOC130996204 |
|---|---|
| GeneID | 130996204 |
| locus_tag | - |
| NCBI Name | LOC130996204 |
| 原始查询 | LOC130996204 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | BTB/POZ and MATH domain-containing protein 3-like |
| 产物 | BTB/POZ and MATH domain-containing protein 3-like |
| Arabidopsis | AT2G39760 (BPM3)BTB/POZ/MATH-domains containing protein [Source:NCBI gene (formerly Entrezgene);Acc:818561] identity=56.5; qcov=1.12; evalue=1.53e-126; confidence=high |
| Rice | Os07g0101400 (OsMB9)- identity=55.2; qcov=1.07; evalue=2.74e-120; confidence=high |
| GO | GO:0005515 (protein binding); GO:0016567 (protein ubiquitination) |
| KEGG | - |
| Pfam | PF00651 (BTB); PF22486 (MATH_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130996204 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 0.80000 | XP_057777697.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057777697.1 |
| 3 | Cytoplasm | 细胞质 | 0.60000 | XP_057777697.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057777697.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057777697.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:35801574 |
C |
CAT |
2bp_insertion | frameshift_variant | 1 | D10 |
Chr7:35801574 |
C |
CAT |
2bp_insertion | CDS_variant | 1 | D10 |
Chr7:35801625 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A19,B52,B86,C79 |
Chr7:35801642 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B14 |
Chr7:35801686 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B14 |
Chr7:35801707 |
CA |
C |
1bp_deletion | frameshift_variant | 7 | A10,A18,B5,B66,B72,C42,C43 |
Chr7:35801711 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B14 |
Chr7:35801841 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B8,C48,C60 |
Chr7:35801922 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B52,C55 |
Chr7:35801975 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C2,C39 |
Chr7:35802010 |
A |
AC |
1bp_insertion | frameshift_variant | 6 | A10,B5,B66,B72,C42,C43 |
Chr7:35802154 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B8,C48 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057777697.1PF22486
MATH_2 26-154 aa
PF00651
BTB 171-276 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057777697.1 |
Pfam | PF22486 |
MATH_2 | Domain | 26 | 154 | 9.7e-29 | 101.1 | MATH domain |
XP_057777697.1 |
Pfam | PF00651 |
BTB | Domain | 171 | 276 | 3.4e-22 | 79.4 | BTB/POZ domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。