Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G003659`

染色体: Chr07 坐标: 43655114-43661099 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G003659`
名称	SmilChr07G003659
描述	alpha,alpha-trehalose-phosphate synthase [UDP-forming] 5
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	43655114 - 43661099 / `+`

ID 对照

NCBI Gene ID	`LOC130996259`
GeneID	`130996259`
locus_tag	`-`
NCBI Name	`LOC130996259`
原始查询	`LOC130996259`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	alpha,alpha-trehalose-phosphate synthase [UDP-forming] 5
产物	alpha%2Calpha-trehalose-phosphate synthase [UDP-forming] 5
Arabidopsis	`AT4G17770` (TPS5) trehalose phosphatase/synthase 5 [Source:NCBI gene (formerly Entrezgene);Acc:827498] identity=77.4; qcov=1; evalue=0; confidence=high
Rice	`Os09g0397300` - identity=67.6; qcov=1.01; evalue=0; confidence=high
GO	GO:0003824 (catalytic activity); GO:0005829 (cytosol); GO:0005992 (trehalose biosynthetic process); GO:0070413 (GO:0070413)
KEGG	smil00500 (Starch and sucrose metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF00982 (Glyco_transf_20); PF02358 (Trehalose_PPase)
InterPro	-
eggNOG	-
NR	GeneID:130996259

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057777745.1`
2	Cytoplasm	细胞质	0.20000	`XP_057777745.1`
3	Nucleus	细胞核	0.00000	`XP_057777745.1`
4	Chromosome	染色体	0.00000	`XP_057777745.1`
5	Centromere	着丝粒	0.00000	`XP_057777745.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:43656179`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B2,B91
`Chr7:43656577`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C35,C40
`Chr7:43656604`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B72
`Chr7:43656946`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A20,B81,C23,C25,C54
`Chr7:43657019`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B123,B19,B67,C39,C78
`Chr7:43657156`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A13,B61,C85
`Chr7:43657184`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B21,B33,C26
`Chr7:43657228`	`GAT`	`G`	2bp_deletion	frameshift_variant	3	B120,B48,C24
`Chr7:43657228`	`GAT`	`G`	2bp_deletion	CDS_variant	3	B120,B48,C24
`Chr7:43657600`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B21,B33,C26
`Chr7:43657774`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr7:43660528`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A13,B2,B61,B91,C85

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057777745.1

859 aa

430

859

Glyco_transf_20

Trehalose_PPase

PF00982 Glyco_transf_20 61-548 aa PF02358 Trehalose_PPase 598-833 aa

XP_057777747.1

859 aa

430

859

Glyco_transf_20

Trehalose_PPase

PF00982 Glyco_transf_20 61-548 aa PF02358 Trehalose_PPase 598-833 aa

XP_057777748.1

859 aa

430

859

Glyco_transf_20

Trehalose_PPase

PF00982 Glyco_transf_20 61-548 aa PF02358 Trehalose_PPase 598-833 aa

XP_057777749.1

859 aa

430

859

Glyco_transf_20

Trehalose_PPase

PF00982 Glyco_transf_20 61-548 aa PF02358 Trehalose_PPase 598-833 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057777745.1`	Pfam	`PF00982`	Glyco_transf_20	Family	61	548	2.3e-189	630.8	Glycosyltransferase family 20
`XP_057777745.1`	Pfam	`PF02358`	Trehalose_PPase	Family	598	833	1.1e-80	270.9	Trehalose-phosphatase
`XP_057777747.1`	Pfam	`PF00982`	Glyco_transf_20	Family	61	548	2.3e-189	630.8	Glycosyltransferase family 20
`XP_057777747.1`	Pfam	`PF02358`	Trehalose_PPase	Family	598	833	1.1e-80	270.9	Trehalose-phosphatase
`XP_057777748.1`	Pfam	`PF00982`	Glyco_transf_20	Family	61	548	2.3e-189	630.8	Glycosyltransferase family 20
`XP_057777748.1`	Pfam	`PF02358`	Trehalose_PPase	Family	598	833	1.1e-80	270.9	Trehalose-phosphatase
`XP_057777749.1`	Pfam	`PF00982`	Glyco_transf_20	Family	61	548	2.3e-189	630.8	Glycosyltransferase family 20
`XP_057777749.1`	Pfam	`PF02358`	Trehalose_PPase	Family	598	833	1.1e-80	270.9	Trehalose-phosphatase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057921762.1
GGTAGTTTCAAGATTGGATTAAGTTTGGTTAAGAGTTGGGTAATGATGAGCTTACATTAATTAACCATAGTTAAACAGTAACAGACAAAAAATATTTGCAGCTCACTGTTTTTCCTTCTTGCTTTCATCACCGGCACTTATTATGCACCATTTCTCGACCTATTTCTTCTTCCCTTTTTAGTGAGAGAAAGAGAATAAGAGAATCTTTCTCTGCATACCAACACCATTACTTTGAGGGCCGTTTTACGATTTTTGCTCAC...

XM_057921764.1
TCTACTTTCTCATTGGCTATTATTACCTACTAACACTAGCACTTCTCTTGTGTGAGTTACTTTTTTGCGTCTTTTTTCACTTTAAAAAAAACCAAAATTATTTTATTTTGTTTCTCAATCTGTTGCCCACTTTCTGCAATGTTACTGTGGTGCTTTTTCACTGTAAGCTGCGAAATTTTGAGTTTTTCTATCATGGAAGGTGTCTTTAATGGTGGAAGATGGGTTGAATAAGCTGGTCAGAGGCATACTTGATTTATTTG...

CDS

4 records

下载 CDS FASTA

LOC130996259
ATGGTTTCTAGGTCTTATTCCAACTTATTGGATCTTACATCTGGTGGATCATCACCTACCTTCAGCCGAGGGGTGAAGAAACTATCCCGAGTTGCAACTGTAGCCGGGGTGTTATCTGAGCTAGACGATGAAAGTAGAAGCAATGGTGGATCCGATGCTCCCTCCTCTATTGCACAAGAGCGTATGATTATTGTTGGGAATCAGCTCCCACTTCGTGCACGAAGGAACGAGTCAGATGGAAAGAAAGGGTGGAGCTTCAG...

Protein

4 records

下载 Protein FASTA

XP_057777745.1
MVSRSYSNLLDLTSGGSSPTFSRGVKKLSRVATVAGVLSELDDESRSNGGSDAPSSIAQERMIIVGNQLPLRARRNESDGKKGWSFSWDEDSLLLQLKDGLGEDVEVIYVGSLKEEIDFSEQDDVAQTLLENFNCVPAFIPPELFSKFYHGFCKQYLWPLFHYMLPLSPDLGGRFDRTLWQAYVSVNKIFADKVMEVITPDDDFVWVHDYHLMVLPTFLRKRFNRVKLGFFLHSPFPSSEIYRTLPVRTELLRALLNSDL...

XP_057777747.1
MVSRSYSNLLDLTSGGSSPTFSRGVKKLSRVATVAGVLSELDDESRSNGGSDAPSSIAQERMIIVGNQLPLRARRNESDGKKGWSFSWDEDSLLLQLKDGLGEDVEVIYVGSLKEEIDFSEQDDVAQTLLENFNCVPAFIPPELFSKFYHGFCKQYLWPLFHYMLPLSPDLGGRFDRTLWQAYVSVNKIFADKVMEVITPDDDFVWVHDYHLMVLPTFLRKRFNRVKLGFFLHSPFPSSEIYRTLPVRTELLRALLNSDL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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