Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G003660`

染色体: Chr07 坐标: 43701286-43705416 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G003660`
名称	SmilChr07G003660
描述	uncharacterized SmilChr07G003660
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	43701286 - 43705416 / `+`

ID 对照

NCBI Gene ID	`LOC130996260`
GeneID	`130996260`
locus_tag	`-`
NCBI Name	`LOC130996260`
原始查询	`LOC130996260`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	RNA-binding (RRM/RBD/RNP motifs) family protein [Source:NCBI gene (formerly Entrezgene);Acc:834728]; symbol=AT5G46840; hit=AT5G46840; species=arabidopsis; confidence=high
产物	RNA-binding (RRM/RBD/RNP motifs) family protein [Source:NCBI gene (formerly Entrezgene);Acc:834728]; symbol=AT5G46840; hit=AT5G46840; species=arabidopsis; confidence=high
Arabidopsis	`AT5G46840` (AT5G46840) RNA-binding (RRM/RBD/RNP motifs) family protein [Source:NCBI gene (formerly Entrezgene);Acc:834728] identity=49.4; qcov=0.991; evalue=1e-127; confidence=high
Rice	`Os03g0854300` - identity=51.6; qcov=0.73; evalue=1.96e-111; confidence=high
GO	GO:0003729 (mRNA binding); GO:0005829 (cytosol)
KEGG	-
Pfam	PF00076 (RRM_1)
InterPro	-
eggNOG	-
NR	GeneID:130996260

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057777750.1`
2	Nucleolus	核仁	1.00000	`XP_057777750.1`
3	Nucleolus rim	Nucleolus rim	0.20000	`XP_057777750.1`
4	Chromosome	染色体	0.00000	`XP_057777750.1`
5	Centromere	着丝粒	0.00000	`XP_057777750.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:43701585`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B13,B136,D11
`Chr7:43701659`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B68
`Chr7:43701676`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B9
`Chr7:43702110`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B35,C64
`Chr7:43702152`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A19,C83,D9
`Chr7:43702157`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A19,C83,D9
`Chr7:43702184`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B132,B65,B75,C46,D6
`Chr7:43702198`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A19,C83,D10,D9
`Chr7:43702205`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A19,C83,D10,D9
`Chr7:43702211`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A19,C36,C83,D10,D9
`Chr7:43703263`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C50
`Chr7:43703470`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B13,B21,C73,C86

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057777750.1

544 aa

272

544

RRM_1

PF00076 RRM_1 227-259 aa PF00076 RRM_1 338-411 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057777750.1`	Pfam	`PF00076`	RRM_1	Domain	227	259	3.9e-20	72.2	RNA recognition motif
`XP_057777750.1`	Pfam	`PF00076`	RRM_1	Domain	338	411	3.9e-20	72.2	RNA recognition motif

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057921767.1
TGGAACTCAAACGGAGGGAATATATATTTACCTAAACCAGAACAAACAAGTGTTGGGGTTAGAAGGAAAGCTAACATCTTCTATTGCAAGCCTCCTTCACTGCCCTAGCGCAACCATGAAAACCTAGCTAGGGTTACGTATTCGATTTGCATTCCTAAATTTCTTTTCTTTTACACCGAATAGCATTCATGGCAAAGAAACCTAAAAATTCTCTGAAAAATGGGGATTCAAACGATGTTTCCAAATCCAAGGACGCTTCC...

CDS

1 records

下载 CDS FASTA

LOC130996260
ATGGCAAAGAAACCTAAAAATTCTCTGAAAAATGGGGATTCAAACGATGTTTCCAAATCCAAGGACGCTTCCAATTCATCCACAGTTTTCAAGACCCTGTTCGGCGAAGTTCCTGGGCAAGACTCAGCTGCAAATTCTCTTTTCTCGGATAACAATCCATTCCACCGGAAATTTCTAAAAACGCAGCCGCCAAATGAACAATCGATATTAGGGCTTGCAGGAAAAGATAAGATGGATGCCGAGTACGAGGCCAATTTGGA...

Protein

1 records

下载 Protein FASTA

XP_057777750.1
MAKKPKNSLKNGDSNDVSKSKDASNSSTVFKTLFGEVPGQDSAANSLFSDNNPFHRKFLKTQPPNEQSILGLAGKDKMDAEYEANLEDSDFSEAKQPKKRKKYKVKKESSGSDTEVVEEISKKFKRAELKEDENKEKSNLGQETVQKDFERNGESGVDKNEKKKKKRKRDEVEAEYEAKRYGITDEIDESKGQTNVVGEKRKKMDNPEDMVVAKEDFDDESKLLRTVFVGNLPLKLKKKELAKEFGKFGEVESVRIRSVP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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