当前解析结果
SmilChr01G003774| 统一新 Gene ID | SmilChr01G003774 |
|---|---|
| 名称 | SmilChr01G003774 |
| 描述 | 2-alkenal reductase (NADP(+)-dependent)-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 56125416 - 56134061 / + |
| NCBI Gene ID | LOC130996539 |
|---|---|
| GeneID | 130996539 |
| locus_tag | - |
| NCBI Name | LOC130996539 |
| 原始查询 | LOC130996539 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | 2-alkenal reductase (NADP(+)-dependent)-like |
| 产物 | 2-alkenal reductase (NADP(+)-dependent)-like |
| Arabidopsis | AT5G16990 (AT5G16990)Zinc-binding dehydrogenase family protein [Source:NCBI gene (formerly Entrezgene);Acc:831562] identity=61.2; qcov=0.991; evalue=4.35e-163; confidence=high |
| Rice | Os04g0497000 (OsNADPH1)- identity=60.5; qcov=1.01; evalue=1.53e-151; confidence=high |
| GO | GO:0032440 (2-alkenal reductase [NAD(P)H] activity) |
| KEGG | - |
| Pfam | PF00107 (ADH_zinc_N); PF13602 (ADH_zinc_N_2); PF16884 (ADH_N_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130996539 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057777808.1 |
| 2 | Cytosol | 细胞质基质 | 0.40000 | XP_057777808.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057777808.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057777808.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057777808.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:56125656 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr1:56125710 |
AT |
A |
1bp_deletion | frameshift_variant | 18 | A7,B111,B2,B25,B60,B64,B72,B75,B80,B84,B86,B88,B99,C31,C5,C55,C7,C80 |
Chr1:56126028 |
CCA |
C |
2bp_deletion | frameshift_variant | 1 | B28 |
Chr1:56126028 |
CCA |
C |
2bp_deletion | CDS_variant | 1 | B28 |
Chr1:56132758 |
A |
AT |
1bp_insertion | frameshift_variant | 2 | B104,D11 |
Chr1:56132758 |
A |
AT |
1bp_insertion | CDS_variant | 2 | B104,D11 |
Chr1:56133020 |
G |
GC |
1bp_insertion | frameshift_variant | 1 | D3 |
Chr1:56133020 |
G |
GC |
1bp_insertion | CDS_variant | 1 | D3 |
Chr1:56133278 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B13,B56,B96,C5 |
Chr1:56133283 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr1:56133286 |
TG |
T |
1bp_deletion | frameshift_variant | 1 | B123 |
Chr1:56133286 |
TG |
T |
1bp_deletion | CDS_variant | 1 | B123 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057777808.1PF16884
ADH_N_2 21-118 aa
PF00107
ADH_zinc_N 168-301 aa
PF13602
ADH_zinc_N_2 202-341 aa
XP_057777810.1PF16884
ADH_N_2 21-118 aa
PF00107
ADH_zinc_N 168-301 aa
PF13602
ADH_zinc_N_2 202-341 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057777808.1 |
Pfam | PF16884 |
ADH_N_2 | Family | 21 | 118 | 2.5e-20 | 73.1 | N-terminal domain of oxidoreductase |
XP_057777808.1 |
Pfam | PF00107 |
ADH_zinc_N | Domain | 168 | 301 | 1.5e-22 | 80.6 | Zinc-binding dehydrogenase |
XP_057777808.1 |
Pfam | PF13602 |
ADH_zinc_N_2 | Domain | 202 | 341 | 3.1e-08 | 35.3 | Zinc-binding dehydrogenase |
XP_057777810.1 |
Pfam | PF16884 |
ADH_N_2 | Family | 21 | 118 | 2.5e-20 | 73.1 | N-terminal domain of oxidoreductase |
XP_057777810.1 |
Pfam | PF00107 |
ADH_zinc_N | Domain | 168 | 301 | 1.5e-22 | 80.6 | Zinc-binding dehydrogenase |
XP_057777810.1 |
Pfam | PF13602 |
ADH_zinc_N_2 | Domain | 202 | 341 | 3.1e-08 | 35.3 | Zinc-binding dehydrogenase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。