当前解析结果
SmilChr08G003425| 统一新 Gene ID | SmilChr08G003425 |
|---|---|
| 名称 | SmilChr08G003425 |
| 描述 | uncharacterized SmilChr08G003425 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 36516378 - 36518784 / - |
| NCBI Gene ID | LOC130996560 |
|---|---|
| GeneID | 130996560 |
| locus_tag | - |
| NCBI Name | LOC130996560 |
| 原始查询 | LOC130996560 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os01g0595300; species=rice; confidence=low |
| 产物 | hit=Os01g0595300; species=rice; confidence=low |
| Arabidopsis | AT1G06740 (MUG3)MuDR family transposase [Source:NCBI gene (formerly Entrezgene);Acc:3766669] identity=26.61; qcov=0.599; evalue=4.68e-11; confidence=low |
| Rice | Os01g0595300- identity=32.08; qcov=0.734; evalue=3.87e-20; confidence=low |
| GO | GO:0008270 (zinc ion binding) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130996560 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:36516523 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B53 |
Chr8:36516533 |
TGC |
T |
2bp_deletion | frameshift_variant | 1 | C81 |
Chr8:36516533 |
TGC |
T |
2bp_deletion | CDS_variant | 1 | C81 |
Chr8:36516577 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B53,D5 |
Chr8:36516594 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B53,D5 |
Chr8:36516621 |
G |
A |
EMS_canonical_SNV | stop_gained | 2 | B53,D5 |
Chr8:36516621 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B53,D5 |
Chr8:36516669 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C76 |
Chr8:36516690 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B108,B110,C1,C3 |
Chr8:36516722 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B99,C11,C69 |
Chr8:36516762 |
G |
A |
EMS_canonical_SNV | stop_gained | 3 | B1,B121,B133 |
Chr8:36516762 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B1,B121,B133 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。