当前解析结果
SmilChr08G003429| 统一新 Gene ID | SmilChr08G003429 |
|---|---|
| 名称 | SmilChr08G003429 |
| 描述 | serine/threonine-protein kinase KIPK1-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 36545162 - 36549864 / - |
| NCBI Gene ID | LOC130996564 |
|---|---|
| GeneID | 130996564 |
| locus_tag | - |
| NCBI Name | LOC130996564 |
| 原始查询 | LOC130996564 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | serine/threonine-protein kinase KIPK1-like |
| 产物 | serine/threonine-protein kinase KIPK1-like |
| Arabidopsis | AT3G52890 (KIPK)KCBP-interacting protein kinase [Source:NCBI gene (formerly Entrezgene);Acc:824455] identity=47.1; qcov=1.09; evalue=0; confidence=high |
| Rice | Os09g0258500- identity=54.2; qcov=0.59; evalue=0; confidence=medium |
| GO | GO:0004674 (protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0005886 (plasma membrane); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130996564 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 0.80000 | XP_057777832.1 |
| 2 | Nucleus | 细胞核 | 0.40000 | XP_057777832.1 |
| 3 | Cytoplasm | 细胞质 | 0.40000 | XP_057777832.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057777832.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057777832.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:36545630 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A21,C18 |
Chr8:36545661 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A3 |
Chr8:36545709 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B9 |
Chr8:36545773 |
A |
AG |
1bp_insertion | frameshift_variant | 5 | A23,B133,B137,B140,B34 |
Chr8:36545773 |
A |
AG |
1bp_insertion | CDS_variant | 5 | A23,B133,B137,B140,B34 |
Chr8:36545777 |
GA |
G |
1bp_deletion | frameshift_variant | 6 | A23,B133,B137,B140,B34,C46 |
Chr8:36545920 |
TGA |
T |
2bp_deletion | frameshift_variant | 49 | A10,A20,A9,B106,B107,B109,B114,B119,B124,B128,B13,B135,B137,B19,B29,B34,B37,B39,B4,B46,B53,B55,B60,B63,B66,B68,B7,B70,B78,B87,B92,B98,C10,C12,C2,C3,C35,C46,C49,C56,C70,C71,C73,C74,C77,C79,D2,D4,D6 |
Chr8:36545957 |
CAT |
C |
2bp_deletion | frameshift_variant | 102 | A1,A13,A14,A16,A18,A19,A20,A22,A24,B1,B10,B102,B106,B110,B112,B115,B119,B12,B120,B122,B123,B125,B127,B129,B130,B135,B137,B140,B17,B23,B24,B29,B30,B31,B33,B35,B37,B40,B42,B48,B51,B56,B58,B6,B63,B64,B65,B68,B69,B7,B70,B71,B73,B75,B8,B80,B81,B89,B9,B92,B95,B96,B97,B99,C13,C14,C15,C16,C23,C24,C25,C27,C31,C32,C33,C37,C38,C40,C42,C44,C47,C52,C54,C56,C58,C59,C60,C61,C63,C64,C65,C70,C73,C8,C81,C84,C85,D1,D11,D2,D3,D4 |
Chr8:36545961 |
G |
GC |
1bp_insertion | frameshift_variant | 105 | A1,A13,A14,A16,A18,A19,A20,A22,A24,B1,B10,B102,B106,B110,B112,B115,B119,B12,B120,B122,B123,B125,B127,B129,B130,B133,B135,B136,B137,B140,B17,B23,B24,B29,B30,B31,B33,B35,B37,B40,B42,B48,B51,B56,B58,B6,B63,B64,B65,B68,B69,B7,B70,B71,B73,B75,B8,B80,B81,B89,B9,B92,B93,B95,B96,B97,B99,C13,C14,C15,C16,C23,C25,C27,C31,C32,C33,C37,C38,C40,C42,C44,C47,C52,C54,C56,C58,C59,C60,C61,C63,C64,C65,C70,C73,C8,C81,C84,C85,D1,D10,D11,D2,D3,D4 |
Chr8:36546089 |
TA |
T |
1bp_deletion | frameshift_variant | 91 | A1,A10,A16,A19,A20,A3,A4,B103,B106,B107,B110,B114,B115,B121,B123,B127,B129,B13,B130,B133,B136,B137,B140,B17,B23,B3,B30,B34,B35,B4,B40,B42,B47,B48,B49,B5,B55,B56,B57,B58,B59,B63,B64,B68,B71,B79,B8,B83,B90,B94,B95,B96,B98,B99,C10,C13,C15,C16,C19,C2,C23,C24,C26,C28,C29,C31,C32,C35,C38,C40,C42,C44,C52,C54,C59,C60,C61,C62,C63,C64,C68,C70,C75,C79,C8,C81,C84,D1,D4,D7,D8 |
Chr8:36546805 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B44 |
Chr8:36546838 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057777832.1PF00069
Pkinase 532-693 aa
PF07714
PK_Tyr_Ser-Thr 533-682 aa
PF00069
Pkinase 762-865 aa
PF07714
PK_Tyr_Ser-Thr 769-849 aa
XP_057777833.1PF00069
Pkinase 532-693 aa
PF07714
PK_Tyr_Ser-Thr 533-682 aa
PF00069
Pkinase 762-865 aa
PF07714
PK_Tyr_Ser-Thr 769-849 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057777832.1 |
Pfam | PF00069 |
Pkinase | Domain | 532 | 693 | 7.2e-59 | 200.0 | Protein kinase domain |
XP_057777832.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 533 | 682 | 3.5e-28 | 99.3 | Protein tyrosine and serine/threonine kinase |
XP_057777832.1 |
Pfam | PF00069 |
Pkinase | Domain | 762 | 865 | 7.2e-59 | 200.0 | Protein kinase domain |
XP_057777832.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 769 | 849 | 3.5e-28 | 99.3 | Protein tyrosine and serine/threonine kinase |
XP_057777833.1 |
Pfam | PF00069 |
Pkinase | Domain | 532 | 693 | 7.2e-59 | 200.0 | Protein kinase domain |
XP_057777833.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 533 | 682 | 3.5e-28 | 99.3 | Protein tyrosine and serine/threonine kinase |
XP_057777833.1 |
Pfam | PF00069 |
Pkinase | Domain | 762 | 865 | 7.2e-59 | 200.0 | Protein kinase domain |
XP_057777833.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 769 | 849 | 3.5e-28 | 99.3 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。