当前解析结果
SmilChr08G003432| 统一新 Gene ID | SmilChr08G003432 |
|---|---|
| 名称 | SmilChr08G003432 |
| 描述 | monodehydroascorbate reductase |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 36594136 - 36598914 / + |
| NCBI Gene ID | LOC130996567 |
|---|---|
| GeneID | 130996567 |
| locus_tag | - |
| NCBI Name | LOC130996567 |
| 原始查询 | LOC130996567 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | monodehydroascorbate reductase |
| 产物 | monodehydroascorbate reductase |
| Arabidopsis | AT3G52880 (MDAR1)monodehydroascorbate reductase 1 [Source:NCBI gene (formerly Entrezgene);Acc:824454] identity=74.9; qcov=1; evalue=0; confidence=high |
| Rice | Os09g0567300 (MDHAR)- identity=77.6; qcov=0.998; evalue=0; confidence=high |
| GO | GO:0005737 (cytoplasm); GO:0016651 (oxidoreductase activity, acting on NAD(P)H); GO:0050660 (flavin adenine dinucleotide binding) |
| KEGG | smil00053 (Ascorbate and aldarate metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00070 (Pyr_redox); PF07992 (Pyr_redox_2); PF21791 (MDHAR3-like_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130996567 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057777834.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057777834.1 |
| 3 | Mitochondrion | 线粒体 | 0.20000 | XP_057777834.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057777834.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057777834.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:36594514 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C17 |
Chr8:36596145 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C87 |
Chr8:36596530 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C14 |
Chr8:36596744 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B104,B28,B4,B95,D1 |
Chr8:36596750 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B104,B28,B4,B95,D1 |
Chr8:36596766 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B105,B51,C35 |
Chr8:36596780 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B107,B27,B69,B73 |
Chr8:36596961 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr8:36597027 |
A |
ATG |
2bp_insertion | frameshift_variant | 16 | A11,A15,A18,A24,A6,B10,B100,B108,B120,B122,B26,B35,B74,B80,B87,C37 |
Chr8:36597028 |
CAA |
C |
2bp_deletion | frameshift_variant | 17 | A11,A15,A18,A24,A6,B10,B100,B108,B120,B122,B26,B35,B74,B80,B87,C37,D1 |
Chr8:36597297 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C81 |
Chr8:36597490 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B28,B74,C28 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057777834.1PF07992
Pyr_redox_2 6-322 aa
PF00070
Pyr_redox 165-247 aa
PF21791
MDHAR3-like_C 344-431 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057777834.1 |
Pfam | PF07992 |
Pyr_redox_2 | Domain | 6 | 322 | 5.6e-58 | 197.4 | Pyridine nucleotide-disulphide oxidoreductase |
XP_057777834.1 |
Pfam | PF00070 |
Pyr_redox | Domain | 165 | 247 | 3.3e-15 | 57.1 | Pyridine nucleotide-disulphide oxidoreductase |
XP_057777834.1 |
Pfam | PF21791 |
MDHAR3-like_C | Domain | 344 | 431 | 1.8e-42 | 144.1 | Monodehydroascorbate reductase 3-like, C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。