Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G003436`

染色体: Chr08 坐标: 36660710-36664659 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G003436`
名称	SmilChr08G003436
描述	uncharacterized SmilChr08G003436
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	36660710 - 36664659 / `-`

ID 对照

NCBI Gene ID	`LOC130996569`
GeneID	`130996569`
locus_tag	`-`
NCBI Name	`LOC130996569`
原始查询	`LOC130996569`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Zim17-type zinc finger protein [Source:NCBI gene (formerly Entrezgene);Acc:843204]; symbol=AT1G68730; hit=AT1G68730; species=arabidopsis; confidence=low
产物	Zim17-type zinc finger protein [Source:NCBI gene (formerly Entrezgene);Acc:843204]; symbol=AT1G68730; hit=AT1G68730; species=arabidopsis; confidence=low
Arabidopsis	`AT1G68730` (AT1G68730) Zim17-type zinc finger protein [Source:NCBI gene (formerly Entrezgene);Acc:843204] identity=63; qcov=0.403; evalue=1.23e-29; confidence=low
Rice	`Os06g0724400` (OsDNLZ1) - identity=58.9; qcov=0.309; evalue=3.12e-16; confidence=low
GO	GO:0005739 (mitochondrion); GO:0006457 (protein folding); GO:0008270 (zinc ion binding); GO:0030150 (protein import into mitochondrial matrix); GO:0050821 (protein stabilization); GO:0051087 (protein-folding chaperone binding)
KEGG	-
Pfam	PF05180 (zf-DNL)
InterPro	-
eggNOG	-
NR	GeneID:130996569

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057777836.1`
2	Chloroplast stroma	叶绿体基质	0.60000	`XP_057777836.1`
3	Nucleus	细胞核	0.00000	`XP_057777836.1`
4	Chromosome	染色体	0.00000	`XP_057777836.1`
5	Centromere	着丝粒	0.00000	`XP_057777836.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:36660873`	`T`	`TA`	1bp_insertion	frameshift_variant	61	A10,A13,A14,A2,A22,A8,B100,B11,B115,B117,B132,B133,B138,B139,B140,B2,B21,B36,B41,B44,B47,B50,B55,B56,B58,B59,B61,B64,B7,B70,B72,B73,B78,B83,B84,B85,B89,B96,B98,C17,C24,C31,C33,C4,C41,C54,C56,C61,C65,C71,C72,C74,C75,C78,C80,C82,C84,D2,D3,D5,D6
`Chr8:36661563`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B100,B107
`Chr8:36661614`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B69,B73
`Chr8:36662143`	`G`	`A`	EMS_canonical_SNV	stop_gained	136	A10,A11,A13,A15,A20,A21,A22,A7,A9,B100,B104,B107,B109,B11,B111,B114,B115,B118,B12,B121,B122,B123,B124,B126,B130,B136,B137,B138,B139,B14,B140,B16,B18,B2,B20,B21,B22,B23,B25,B26,B27,B29,B3,B30,B31,B32,B34,B35,B37,B38,B4,B43,B44,B45,B47,B48,B49,B5,B50,B53,B55,B56,B59,B61,B62,B64,B65,B69,B72,B73,B76,B80,B81,B83,B84,B85,B86,B89,B9,B90,B91,B92,B96,B97,B99,C12,C15,C17,C18,C19,C21,C23,C25,C26,C27,C28,C29,C30,C32,C33,C34,C35,C36,C37,C39,C40,C41,C42,C43,C45,C46,C47,C5,C53,C54,C56,C57,C58,C59,C64,C67,C7,C71,C72,C73,C78,C79,C80,C82,C83,C85,C87,D11,D2,D6,D9
`Chr8:36662173`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B69,B73,C23,C46
`Chr8:36662180`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr8:36662235`	`T`	`TAG`	2bp_insertion	frameshift_variant	9	B114,B44,B69,B97,C15,C27,C35,C52,C80
`Chr8:36662237`	`AGC`	`A`	2bp_deletion	frameshift_variant	7	B44,B69,B97,C15,C27,C35,C52
`Chr8:36662252`	`C`	`T`	EMS_canonical_SNV	stop_gained	20	A25,A9,B10,B110,B121,B13,B16,B28,B34,B37,B44,B53,B58,B6,B69,B82,C20,C31,C53,D6
`Chr8:36662482`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B34
`Chr8:36662529`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B131,B24

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057777836.1

181 aa

181

zf-DNL

PF05180 zf-DNL 118-165 aa

XP_057777837.1

181 aa

181

zf-DNL

PF05180 zf-DNL 118-165 aa

XP_057777838.1

181 aa

181

zf-DNL

PF05180 zf-DNL 118-165 aa

XP_057777839.1

181 aa

181

zf-DNL

PF05180 zf-DNL 118-165 aa

XP_057777840.1

181 aa

181

zf-DNL

PF05180 zf-DNL 118-165 aa

XP_057777841.1

181 aa

181

zf-DNL

PF05180 zf-DNL 118-165 aa

XP_057777842.1

181 aa

181

zf-DNL

PF05180 zf-DNL 118-165 aa

XP_057777843.1

181 aa

181

zf-DNL

PF05180 zf-DNL 118-165 aa

XP_057777844.1

181 aa

181

zf-DNL

PF05180 zf-DNL 118-165 aa

XP_057777846.1

181 aa

181

zf-DNL

PF05180 zf-DNL 118-165 aa

XP_057777847.1

181 aa

181

zf-DNL

PF05180 zf-DNL 118-165 aa

XP_057777848.1

181 aa

181

zf-DNL

PF05180 zf-DNL 118-165 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057777836.1`	Pfam	`PF05180`	zf-DNL	Domain	118	165	6.5e-16	58.8	DNL zinc finger
`XP_057777837.1`	Pfam	`PF05180`	zf-DNL	Domain	118	165	6.5e-16	58.8	DNL zinc finger
`XP_057777838.1`	Pfam	`PF05180`	zf-DNL	Domain	118	165	6.5e-16	58.8	DNL zinc finger
`XP_057777839.1`	Pfam	`PF05180`	zf-DNL	Domain	118	165	6.5e-16	58.8	DNL zinc finger
`XP_057777840.1`	Pfam	`PF05180`	zf-DNL	Domain	118	165	6.5e-16	58.8	DNL zinc finger
`XP_057777841.1`	Pfam	`PF05180`	zf-DNL	Domain	118	165	6.5e-16	58.8	DNL zinc finger
`XP_057777842.1`	Pfam	`PF05180`	zf-DNL	Domain	118	165	6.5e-16	58.8	DNL zinc finger
`XP_057777843.1`	Pfam	`PF05180`	zf-DNL	Domain	118	165	6.5e-16	58.8	DNL zinc finger
`XP_057777844.1`	Pfam	`PF05180`	zf-DNL	Domain	118	165	6.5e-16	58.8	DNL zinc finger
`XP_057777846.1`	Pfam	`PF05180`	zf-DNL	Domain	118	165	6.5e-16	58.8	DNL zinc finger
`XP_057777847.1`	Pfam	`PF05180`	zf-DNL	Domain	118	165	6.5e-16	58.8	DNL zinc finger
`XP_057777848.1`	Pfam	`PF05180`	zf-DNL	Domain	118	165	6.5e-16	58.8	DNL zinc finger

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

12 records

下载 cDNA FASTA

XM_057921857.1
AAAAAAAAGAAAGAGTAAAAAACAATTGAACTCCCTCTCCCTCGCACATCAACCGTCACTCGGCAGTCTCTCTCTTGCTCTCTCCGGCAGTCCGGCCACCGCTCGTCCGGCTCCGACTGTACCTGAAGGACCATCATTCAAGTTGAATTTGGTTTGGAAGATGAAGAAATCAAAGATTCTTTTTAGTTAAACAACACCGTCGTGAATTCAAGAACTCAGTGAAAAGAGGAACAACGAAATTGAAGGTTCTGTTCATCTTC...

XM_057921853.1
AAAAAAAAGAAAGAGTAAAAAACAATTGAACTCCCTCTCCCTCGCACATCAACCGTCACTCGGCAGTCTCTCTCTTGCTCTCTCCGGCAGTCCGGCCACCGCTCGTCCGGCTCCGACTGTACCTGAAGGACCATCATTCAAGTTGAATTTGGTTTGGAAGATGAAGAAATCAAAGGTGAAATTCACAGATCTAGTGATATTATATTTGTATAACATGTGTACAAAAATAACCATCTTTGTAACCATTTGGATCTGGAAAT...

CDS

12 records

下载 CDS FASTA

LOC130996569
ATGGACGCCGTTAACAGCTTCAAATTTCTCGCATTGGAAAAGTATATGCCCCTTGTGGTCAAAGCCCCCAAATTTTCTCTTCCATGTTCCCACTTATTCAGACCTAATTTAGGTGTCAAACATGGAGATTTTACACTTCCGAGGTCATCTTCGATCACCGTTCGCAGTAGTTGGAGGTCGAGAATCGCTTACCAAGGAAATAAGGGTGCGGAGCAATCTTTTAGGGTGCCAACCATTTCATGTTCGATGGTAGATGGCAA...

Protein

12 records

下载 Protein FASTA

XP_057777836.1
MDAVNSFKFLALEKYMPLVVKAPKFSLPCSHLFRPNLGVKHGDFTLPRSSSITVRSSWRSRIAYQGNKGAEQSFRVPTISCSMVDGNGEYKEMEQSSSMDCRQEGVIDLKLPRRRLLVTFTCDSCGARSQRLINRLAYERGLVYVQCSGCSQYHKLVDNLGLVIEYNLQEEIDLDANIDQV

XP_057777837.1
MDAVNSFKFLALEKYMPLVVKAPKFSLPCSHLFRPNLGVKHGDFTLPRSSSITVRSSWRSRIAYQGNKGAEQSFRVPTISCSMVDGNGEYKEMEQSSSMDCRQEGVIDLKLPRRRLLVTFTCDSCGARSQRLINRLAYERGLVYVQCSGCSQYHKLVDNLGLVIEYNLQEEIDLDANIDQV

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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