当前解析结果
SmilChr08G003477| 统一新 Gene ID | SmilChr08G003477 |
|---|---|
| 名称 | SmilChr08G003477 |
| 描述 | purple acid phosphatase 22-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 37386257 - 37389568 / + |
| NCBI Gene ID | LOC130996600 |
|---|---|
| GeneID | 130996600 |
| locus_tag | - |
| NCBI Name | LOC130996600 |
| 原始查询 | LOC130996600 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | purple acid phosphatase 22-like |
| 产物 | purple acid phosphatase 22-like |
| Arabidopsis | AT3G52820 (PAP22)purple acid phosphatase 22 [Source:NCBI gene (formerly Entrezgene);Acc:824448] identity=70.1; qcov=0.921; evalue=0; confidence=high |
| Rice | Os04g0410600 (OsPAP21a)- identity=63; qcov=0.97; evalue=0; confidence=high |
| GO | GO:0003993 (acid phosphatase activity); GO:0046872 (metal ion binding) |
| KEGG | - |
| Pfam | PF00149 (Metallophos); PF14008 (Metallophos_C); PF16656 (Pur_ac_phosph_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130996600 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Vacuole | 液泡 | 1.00000 | XP_057777881.1 |
| 2 | Cell wall | 细胞壁 | 0.20000 | XP_057777881.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057777881.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057777881.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057777881.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:37386467 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B60 |
Chr8:37386509 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr8:37386754 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C75 |
Chr8:37386833 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B29,B87,C15,C42,C45 |
Chr8:37386906 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C87 |
Chr8:37388220 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B111,B79,C43 |
Chr8:37388223 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr8:37388324 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B15 |
Chr8:37388334 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B4 |
Chr8:37388409 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B46 |
Chr8:37388425 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B1,B121 |
Chr8:37388445 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B91,C14 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057777881.1PF16656
Pur_ac_phosph_N 38-125 aa
PF00149
Metallophos 134-324 aa
PF14008
Metallophos_C 339-399 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057777881.1 |
Pfam | PF16656 |
Pur_ac_phosph_N | Domain | 38 | 125 | 2.5e-21 | 76.8 | Purple acid Phosphatase, N-terminal domain |
XP_057777881.1 |
Pfam | PF00149 |
Metallophos | Domain | 134 | 324 | 4.2e-19 | 70.5 | Calcineurin-like phosphoesterase |
XP_057777881.1 |
Pfam | PF14008 |
Metallophos_C | Domain | 339 | 399 | 1.8e-20 | 74.0 | Iron/zinc purple acid phosphatase-like protein C |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。