Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G003492`

染色体: Chr08 坐标: 37534495-37537092 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G003492`
名称	SmilChr08G003492
描述	uncharacterized SmilChr08G003492
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	37534495 - 37537092 / `+`

ID 对照

NCBI Gene ID	`LOC130996612`
GeneID	`130996612`
locus_tag	`-`
NCBI Name	`LOC130996612`
原始查询	`LOC130996612`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	AT3G09110; symbol=AT3G09110; hit=AT3G09110; species=arabidopsis; confidence=low
产物	AT3G09110; symbol=AT3G09110; hit=AT3G09110; species=arabidopsis; confidence=low
Arabidopsis	`AT3G09110` (AT3G09110) - identity=34.9; qcov=0.858; evalue=2.72e-51; confidence=low
Rice	`Os04g0594500` - identity=29.7; qcov=0.982; evalue=2.15e-37; confidence=low
GO	-
KEGG	-
Pfam	PF05056 (DUF674)
InterPro	-
eggNOG	-
NR	GeneID:130996612

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057777890.1`
2	Cytoplasm	细胞质	0.20000	`XP_057777890.1`
3	Chromosome	染色体	0.00000	`XP_057777890.1`
4	Centromere	着丝粒	0.00000	`XP_057777890.1`
5	Chromatin	染色质	0.00000	`XP_057777890.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:37535369`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B12,B8,C43,C80
`Chr8:37535524`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B102,B131,C73,D2,D8
`Chr8:37535560`	`TTG`	`T`	2bp_deletion	frameshift_variant	13	A6,B126,B138,B25,B53,B62,B64,B67,C20,C53,C66,C71,C72
`Chr8:37535564`	`A`	`ACT`	2bp_insertion	frameshift_variant	13	A6,B126,B138,B25,B53,B62,B64,B67,C20,C53,C66,C71,C72
`Chr8:37535589`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A13,B78,C48
`Chr8:37535611`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B126,B138,B85,C66,C72
`Chr8:37535665`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B67,C53,C71
`Chr8:37535669`	`T`	`TG`	1bp_insertion	frameshift_variant	3	B67,C53,C71
`Chr8:37535669`	`T`	`TG`	1bp_insertion	CDS_variant	3	B67,C53,C71
`Chr8:37535671`	`ATT`	`A`	2bp_deletion	frameshift_variant	3	B85,C66,C72
`Chr8:37535671`	`ATT`	`A`	2bp_deletion	CDS_variant	3	B85,C66,C72
`Chr8:37535674`	`CG`	`C`	1bp_deletion	frameshift_variant	3	B85,C66,C72

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057777890.1

465 aa

232

465

DUF674

PF05056 DUF674 6-428 aa PF05056 DUF674 380-460 aa

XP_057777891.1

381 aa

190

381

DUF674

PF05056 DUF674 6-359 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057777890.1`	Pfam	`PF05056`	DUF674	Family	6	428	1.4e-102	344.6	Protein of unknown function (DUF674)
`XP_057777890.1`	Pfam	`PF05056`	DUF674	Family	380	460	1.4e-102	344.6	Protein of unknown function (DUF674)
`XP_057777891.1`	Pfam	`PF05056`	DUF674	Family	6	359	2e-87	294.7	Protein of unknown function (DUF674)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057921907.1
AGTGGCAAATATTTTACTCTTTTCTATTTACAAAACTTTACTGTTTGCTCCATTTTGCTTTAGTAGCCAAATAATGCAAGTGCTTCTCTCTCACTCCTCTCTTCACTTTTAGCAGCTCAGAACCACCGCCGCAGCCACCCTTCCTCCGCCGCGCGCTCAACCACCCCCATCCAACAACACTTTTTCTTCTGGTTTAGACTTGAAGATCAGTATTCTGAAAATCCCCAATTTTTATAAATTGGAAGTCAGAGCACTCCAAA...

XM_057921908.1
AAATATTTTACTCTTTTCTATTTACAAAACTTTACTGTTTGCTCCATTTTGCTTTAGTAGCCAAATAATGCAAGTGCTTCTCTCTCACTCCTCTCTTCACTTTTAGCAGCTCAGAACCACCGCCGCAGCCACCCTTCCTCCGCCGCGCGCTCAACCACCCCCATCCAACAACACTTTTTCTTCTGGTTTAGACTTGAAGATCAGTATTCTGAAAATCCCCAATTTTTATAAATTGGAAGTCAGAGCACTCCAAAATGTCT...

CDS

2 records

下载 CDS FASTA

LOC130996612
ATGTCTGATGCTAAAGAAGTAGACTTCTCACTGAAAGTGATGATAGATAAAGAGAAAACTAAGGTACTCTTTGCAGAAGTTGATAGCCATTTTGCAGACATTTTGTTAAGCTTCTTGACATTGCCGCTGGGAAGAATTATGAGAATCCTCGAGAAGCACTATGGAGACGAAGCACCTACCATTGGAAGCTTAAACACTTTGTACCATAGCTTAGCCAATCTTGATGATGCCCATTTCTGGACAGATGGTGCTAAGCAGAC...

Protein

2 records

下载 Protein FASTA

XP_057777890.1
MSDAKEVDFSLKVMIDKEKTKVLFAEVDSHFADILLSFLTLPLGRIMRILEKHYGDEAPTIGSLNTLYHSLANLDDAHFWTDGAKQTFLNPASSFEAEYERLKLDIADYQPARYFVCTYCGHRFRSVSMYYDSIQSCKKCGHNSMHEAVAKKGPQAASRDGVFTIHTKSFIISDDLQILPNETGILGIFRILGISDMDKAEPINVTFGFSEIMSLLKGCFISQTPFSDLILNKTRQANSVTVEPEAETSSLNQIENEHNP...

XP_057777891.1
MSDAKEVDFSLKVMIDKEKTKVLFAEVDSHFADILLSFLTLPLGRIMRILEKHYGDEAPTIGSLNTLYHSLANLDDAHFWTDGAKQTFLNPASSFEAEYERLKLDIADYQPARYFVCTYCGHRFRSVSMYYDSIQSCKKCGHNSMHEAVAKKGPQAASRDGVFTIHTKSFIISDDLQILPNETGILGIFRILGISDMDKAEPINVTFGFSEIMSLLKGCFISQTPFSDLILNKTRQANSVTVEPEAETSSLNQIENEHNP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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