Gene Card

Search by standard ID, NCBI Gene ID, GeneID, locus tag, transcript ID, protein ID, or a manually reviewed literature gene name. The page resolves the query to a Red Sage gene and integrates coordinates, sequences, annotations, subcellular localization, EMS variants, and downloads.

Resolved gene

`SmilChr08G003533`

Chromosome: Chr08 Coordinates: 37946667-37948333 Strand: + Biotype: protein_coding

Basic Information

Standard Gene ID	`SmilChr08G003533`
Name	SmilChr08G003533
Description	alpha carbonic anhydrase 1, chloroplastic
Chromosome / SeqID	Chr08 / NC_080394.1
Coordinates and Strand	37946667 - 37948333 / `+`

ID Mapping

NCBI Gene ID	`LOC130996651`
GeneID	`130996651`
locus_tag	`-`
NCBI Name	`LOC130996651`
Original query	`LOC130996651`

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Functional Annotation

Source	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
Description	alpha carbonic anhydrase 1, chloroplastic
Product	alpha carbonic anhydrase 1%2C chloroplastic
Arabidopsis	`AT3G52720` (ACA1) alpha carbonic anhydrase 1 [Source:NCBI gene (formerly Entrezgene);Acc:824438] identity=40.8; qcov=0.981; evalue=3.62e-76; confidence=medium
Rice	`Os02g0533300` (OsalphaCA1) - identity=49.6; qcov=0.867; evalue=5.2e-85; confidence=high
GO	GO:0004089 (carbonate dehydratase activity); GO:0008270 (zinc ion binding)
KEGG	smil00910 (Nitrogen metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
Pfam	PF00194 (Carb_anhydrase)
InterPro	-
eggNOG	-
NR	GeneID:130996651

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Subcellular Localization Top 5

Rank	Location	Chinese	Score	Protein ID
1	Secreted	分泌到胞外	1.00000	`XP_057777929.1`
2	Vacuole	液泡	0.20000	`XP_057777929.1`
3	Nucleus	细胞核	0.00000	`XP_057777929.1`
4	Chromosome	染色体	0.00000	`XP_057777929.1`
5	Centromere	着丝粒	0.00000	`XP_057777929.1`

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EMS Mutant Variants

The table shows the first 12 candidate EMS variants for this gene. Open the EMS module for full filtering and downloads.

Position	REF	ALT	Type	Effect	Carriers	Samples
`Chr8:37947058`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B97,C46
`Chr8:37947228`	`C`	`CTG`	2bp_insertion	frameshift_variant	1	B17
`Chr8:37947228`	`C`	`CTG`	2bp_insertion	CDS_variant	1	B17
`Chr8:37947234`	`CG`	`C`	1bp_deletion	frameshift_variant	1	B92
`Chr8:37947234`	`CG`	`C`	1bp_deletion	CDS_variant	1	B92
`Chr8:37947364`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B2
`Chr8:37947541`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B128,C32,C9,D8
`Chr8:37947698`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	C2,C30,D8,D9
`Chr8:37947707`	`C`	`CAA`	2bp_insertion	frameshift_variant	3	A16,C30,D8
`Chr8:37947707`	`C`	`CAA`	2bp_insertion	CDS_variant	3	A16,C30,D8
`Chr8:37947850`	`C`	`CCA`	2bp_insertion	frameshift_variant	1	D10
`Chr8:37947850`	`C`	`CCA`	2bp_insertion	CDS_variant	1	D10

Open EMS variants

Predicted Protein Domains

Domain results are from the Pfam-A HMM database and HMMER hmmscan; positions are amino-acid coordinates on the corresponding protein sequence.

XP_057777929.1

270 aa

135

270

Carb_anhydrase

PF00194 Carb_anhydrase 41-266 aa

Protein ID	Source	Domain ID	Domain name	Type	Start aa	End aa	E-value	Score	Description
`XP_057777929.1`	Pfam	`PF00194`	Carb_anhydrase	Domain	41	266	3.7e-37	129.0	Eukaryotic-type carbonic anhydrase

cDNA / CDS / Protein Sequences

Download genomic DNA (gene region only)

Every public gene has transcript sequence from the reference annotation. Protein-coding genes also have CDS and protein sequences. CDS and protein downloads do not apply to noncoding RNA. Version suffixes of original accessions are retained.

cDNA

1 records

Download cDNA FASTA

XM_057921946.1
TGAGTCTTCAGAGCACACTCAATAATTCAAGATTCAGACATTCATACTTATCTTGAGTATATTGGGAGTGGTTGGGGTCGTGTCCAAACTTTTTTAGGAAATTTTGGTGTTGTCCACACTATTACTAATAATTCCAACCAAAAAAACCTTAGATATTTGACAAACTCAGGTGTCTCTTTCTGCAATTAGATGAAGTGTTTTCCCAAAAGATGCTGTTGACAAAAAGACACGCGAAAAAAGTTGAGGGTGCGAAGAAGATT...

CDS

1 records

Download CDS FASTA

LOC130996651
ATGGCTGGTTTGTTGAGTGTGACAGCGCTTACTCTGCTGATGCTTCTAGGCTCAGATGCTTTTACTACATCGAAGGTGGAGAAGGCAGTGCAACTGCAGTTCACATACTCGGGAGCAATGGGGCCGGACAAGTGGGCCAGTTTGAATCCCAACTTCTCCCTCTGCGCCACTGGCAAACTGCAGTCGCCGATCAACATTGTTTCGGACCGAGCTGTCCGAAGCACCAAGTTGAAGGCCCTCGTCAGAGATTACCGCGCAGT...

Protein

1 records

Download Protein FASTA

XP_057777929.1
MAGLLSVTALTLLMLLGSDAFTTSKVEKAVQLQFTYSGAMGPDKWASLNPNFSLCATGKLQSPINIVSDRAVRSTKLKALVRDYRAVNVTLVDNKFTVAIEYPDDTGGISVDEKQYALKQMHWHSPSEHRINGKRFAAELHMVHVSEDAKVVVVATLYQLGHPDPLLQTIYKKLNELASEYKSSEATAPIQVGVLEAAELRTTPSKYYRYVGSSSVPPCAEHLVYIVLAQATSISKQQVAALKAPLDIRCKYNARPCQPL...

Flanking Sequence Downloads

Upstream/downstream length is capped at 10000 bp. Negative-strand genes are reverse-complemented so the exported FASTA follows transcriptional 5′ to 3′ orientation.

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