当前解析结果
SmilChr08G003808| 统一新 Gene ID | SmilChr08G003808 |
|---|---|
| 名称 | SmilChr08G003808 |
| 描述 | E3 ubiquitin-protein ligase RDUF1-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 44133107 - 44135032 / - |
| NCBI Gene ID | LOC130996771 |
|---|---|
| GeneID | 130996771 |
| locus_tag | - |
| NCBI Name | LOC130996771 |
| 原始查询 | LOC130996771 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | E3 ubiquitin-protein ligase RDUF1-like |
| 产物 | E3 ubiquitin-protein ligase RDUF1-like |
| Arabidopsis | AT2G39720 (RHC2A)RING-H2 finger C2A [Source:NCBI gene (formerly Entrezgene);Acc:818556] identity=48.1; qcov=0.863; evalue=3.95e-88; confidence=high |
| Rice | Os05g0110000 (OsRFP)- identity=64.6; qcov=0.678; evalue=1.23e-118; confidence=high |
| GO | GO:0005737 (cytoplasm); GO:0016567 (protein ubiquitination); GO:0061630 (ubiquitin protein ligase activity) |
| KEGG | - |
| Pfam | PF00097 (zf-C3HC4); PF06547 (DUF1117); PF13445 (zf-RING_UBOX); PF13639 (zf-RING_2); PF13923 (zf-C3HC4_2); PF14369 (Zn_ribbon_19); PF17123 (zf-RING_11) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130996771 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057778056.1 |
| 2 | Cytosol | 细胞质基质 | 0.60000 | XP_057778056.1 |
| 3 | Nucleus | 细胞核 | 0.40000 | XP_057778056.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057778056.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057778056.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:44133658 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C60 |
Chr8:44133673 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B1,B24 |
Chr8:44134044 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B131 |
Chr8:44134114 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B53,C42,C43 |
Chr8:44134289 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B66,B8 |
Chr8:44134364 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C59 |
Chr8:44134368 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B1 |
Chr8:44134389 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr8:44134427 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B88,C20 |
Chr8:44134466 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr8:44134536 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B131 |
Chr8:44134543 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B28 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057778056.1PF14369
Zn_ribbon_19 3-34 aa
PF13639
zf-RING_2 202-244 aa
PF17123
zf-RING_11 203-230 aa
PF13445
zf-RING_UBOX 203-241 aa
PF00097
zf-C3HC4 203-243 aa
PF13923
zf-C3HC4_2 203-243 aa
PF06547
DUF1117 272-360 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057778056.1 |
Pfam | PF14369 |
Zn_ribbon_19 | Domain | 3 | 34 | 1.9e-12 | 47.8 | zinc-ribbon |
XP_057778056.1 |
Pfam | PF13639 |
zf-RING_2 | Domain | 202 | 244 | 5.5e-12 | 46.5 | Ring finger domain |
XP_057778056.1 |
Pfam | PF17123 |
zf-RING_11 | Domain | 203 | 230 | 7.3e-07 | 29.5 | RING-like zinc finger |
XP_057778056.1 |
Pfam | PF13445 |
zf-RING_UBOX | Domain | 203 | 241 | 1.1e-05 | 26.0 | RING-type zinc-finger |
XP_057778056.1 |
Pfam | PF00097 |
zf-C3HC4 | Domain | 203 | 243 | 3.1e-06 | 27.7 | Zinc finger, C3HC4 type (RING finger) |
XP_057778056.1 |
Pfam | PF13923 |
zf-C3HC4_2 | Domain | 203 | 243 | 1.9e-08 | 34.7 | Zinc finger, C3HC4 type (RING finger) |
XP_057778056.1 |
Pfam | PF06547 |
DUF1117 | Family | 272 | 360 | 2.3e-39 | 135.1 | Protein of unknown function (DUF1117) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。