当前解析结果
SmilChr08G003913| 统一新 Gene ID | SmilChr08G003913 |
|---|---|
| 名称 | SmilChr08G003913 |
| 描述 | uncharacterized SmilChr08G003913 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 46558442 - 46559565 / - |
| NCBI Gene ID | LOC130996833 |
|---|---|
| GeneID | 130996833 |
| locus_tag | - |
| NCBI Name | LOC130996833 |
| 原始查询 | LOC130996833 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | SOUL heme-binding family protein [Source:NCBI gene (formerly Entrezgene);Acc:818374]; symbol=SOUL-1; hit=AT2G37970; species=arabidopsis; confidence=high |
| 产物 | SOUL heme-binding family protein [Source:NCBI gene (formerly Entrezgene);Acc:818374]; symbol=SOUL-1; hit=AT2G37970; species=arabidopsis; confidence=high |
| Arabidopsis | AT2G37970 (SOUL-1)SOUL heme-binding family protein [Source:NCBI gene (formerly Entrezgene);Acc:818374] identity=66.2; qcov=0.939; evalue=2.19e-98; confidence=high |
| Rice | Os01g0850900- identity=63.9; qcov=0.939; evalue=7.42e-95; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | PF04832 (SOUL) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130996833 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057778086.1 |
| 2 | Chloroplast stroma | 叶绿体基质 | 0.60000 | XP_057778086.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057778086.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057778086.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057778086.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:46558649 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B1 |
Chr8:46558700 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B33 |
Chr8:46558723 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B52,B53,C10,C83 |
Chr8:46558747 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C49 |
Chr8:46558776 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B19,B36,B94,C10,C79 |
Chr8:46558855 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B1 |
Chr8:46559234 |
CAT |
C |
2bp_deletion | frameshift_variant | 52 | A10,A18,A2,A22,A4,A5,B10,B101,B110,B117,B124,B135,B136,B17,B21,B25,B33,B35,B38,B39,B40,B58,B59,B62,B66,B70,B81,B82,B84,B89,B99,C1,C12,C23,C27,C3,C32,C35,C48,C52,C55,C58,C64,C66,C68,C74,C76,C84,C87,D3,D5,D8 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057778086.1PF04832
SOUL 43-118 aa
PF04832
SOUL 117-228 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057778086.1 |
Pfam | PF04832 |
SOUL | Family | 43 | 118 | 6.2e-47 | 160.5 | SOUL heme-binding protein |
XP_057778086.1 |
Pfam | PF04832 |
SOUL | Family | 117 | 228 | 6.2e-47 | 160.5 | SOUL heme-binding protein |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。